3W09

Influenza virus neuraminidase subtype N9 (TERN) complexed with 2,3-dif guanidino-neu5ac2en inhibitor

Structural Biology Knowledgebase: 3W09 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.189
  • R-Value Work: 0.144

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3W09

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 46964.16

Macromolecule Entities
Molecule Chains Length Organism Details
Neuraminidase A 388 Influenza a virus EC#: 3.2.1.18 IUBMB
Gene Name(s): NA

Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BMA
Query on BMA

A BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer
 
JSmol
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
GOL
Query on GOL

A GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
MAN
Query on MAN

A ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer
 
JSmol
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
JSmol
ZGE
Query on ZGE

A (2R,3R,4R)-3-acetamido-4-carbamimidamido- 5-fluoranyl-2-[(1R,2R)-1,2,3-tris(oxidanyl)propyl]- 3,4-dihydro-2H-pyran-6-carboxylic acid
C12 H19 F N4 O7
UCGICVWHWQNCDB-NSNFAWTCSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.189
  • R-Value Work: 0.144
  • Space Group: I 4 3 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 180.84 α = 90.00
b = 180.84 β = 90.00
c = 180.84 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-10-25
  • Released Date: 2013-05-01
  • Deposition author(s): Streltsov, V.A.

Revision History

No revisions since initial release