Download MendeleyCrystal structure of unsaturated glucuronyl hydrolase mutant D115N from Streptcoccus agalactiae
Nakamichi, Y., Maruyama, Y., Mikami, B., Hashimoto, W., Murata, K.To be published.
3VXD
Crystal structure of unsaturated glucuronyl hydrolase mutant D115N from Streptcoccus agalactiae
- PDB DOI: https://doi.org/10.2210/pdb3VXD/pdb
- Classification: HYDROLASE
- Organism(s): Streptococcus agalactiae NEM316
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2012-09-11 Released: 2012-10-03
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.219
- R-Value Work: 0.183
- R-Value Observed: 0.185
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative uncharacterized protein gbs1889 | 398 | Streptococcus agalactiae NEM316 | Mutation(s): 1 Gene Names: gbs1889 EC: 3.2.1 |  | |
UniProt | |||||
Find proteins for Q8E372 (Streptococcus agalactiae serotype III (strain NEM316)) Explore Q8E372 Go to UniProtKB: Q8E372 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8E372 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | E [auth A] F [auth B] G [auth C] H [auth C] I [auth D] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.219
- R-Value Work: 0.183
- R-Value Observed: 0.185
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 81.074 | α = 90 |
| b = 95.914 | β = 104.06 |
| c = 110.886 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| MOLREP | phasing |
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2012-10-03 Deposition Author(s): Nakamichi, Y., Maruyama, Y., Mikami, B., Hashimoto, W., Murata, K.
Revision History (Full details and data files)
- Version 1.0: 2012-10-03
Type: Initial release - Version 1.1: 2023-11-08
Changes: Data collection, Database references, Derived calculations, Refinement description
