3VBD

Complex of human carbonic anhydrase II with 4-(6-methoxy-3,4-dihydroisoquinolin-1-yl)benzenesulfonamide

Structural Biology Knowledgebase: 3VBD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.05 Å
  • R-Value Free: 0.160
  • R-Value Work: 0.127

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VBD

Classification: LYASE / LYASE INHIBITOR

Total Structure Weight: 30367.45

Macromolecule Entities
Molecule Chains Length Organism Details
Carbonic anhydrase 2 A 259 Homo sapiens EC#: 4.2.1.1 IUBMB
Gene Name(s): CA2 Gene View

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MBO
Query on MBO

A MERCURIBENZOIC ACID
C7 H5 Hg O2
FVFZSVRSDNUCGG-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
0FZ
Query on 0FZ

A 4-(6-methoxy-3,4-dihydroisoquinolin-1-yl)benzenesulfonamide
C16 H16 N2 O3 S
RZQVMYVIRNCVDY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
0FZ N/A in BindingDB
Ki: 8.6 nM  BindingMOAD
Ki: 8.6 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.05 Å
  • R-Value Free: 0.160
  • R-Value Work: 0.127
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 42.01 α = 90.00
b = 41.18 β = 104.33
c = 71.76 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-02
  • Released Date: 2012-04-04
  • Deposition author(s): Mader, P., Brynda, J., Rezacova, P.

Revision History

  • 2012-06-27
    Type: Citation | Details: Citation update
  • 2012-04-11
    Type: Citation | Details: Citation update