3U38

Intercalation of lambda-[Ru(phen)2(dppz)]2+ into d(CCGGTACCGG)2

Structural Biology Knowledgebase: 3U38 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.13 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.176

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3U38

Classification: DNA

Total Structure Weight: 4670.93

Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3' A 10 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RKP
Query on RKP

A Lambda-Ru(phen)2(dppz) complex
C42 H26 N8 Ru
OYSRBLHMGIHFCB-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BA
Query on BA

A BARIUM ION
Ba
XDFCIPNJCBUZJN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.13 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.176
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 52.56 α = 90.00
b = 52.56 β = 90.00
c = 32.43 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2011-10-05
  • Released Date: 2012-07-04
  • Deposition author(s): Cardin, C.J., Hall, J.P., Niyazi, H.

Revision History

  • 2013-07-10
    Type: Citation | Details: Citation update
  • 2013-05-01
    Type: Non-polymer description | Details: update name of RKP