3TDB

Human Pin1 bound to trans peptidomimetic inhibitor

Structural Biology Knowledgebase: 3TDB SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.27 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.217

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3TDB

Classification: ISOMERASE / Inhibitor

Total Structure Weight: 18531.72

Macromolecule Entities
Molecule Chains Length Organism Details
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 A 158 Homo sapiens EC#: 5.2.1.8 IUBMB
Fragment: UNP residues 6-163
Mutation: R14A
Gene Name(s): PIN1 Gene View

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
3TB
Query on 3TB

A N-[(1E,2R)-1-[(2R)-2-{[(2S)-1-amino-5-carbamimidamido- 1-oxopentan-2-yl]carbamoyl}cyclopentylidene]- 3-(phosphonooxy)propan-2-yl]-L-phenylalaninamide
C24 H38 N7 O7 P
UFUNWHANDTZFCQ-BELXZNSDSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PE4
Query on PE4

A 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]- ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
POLYETHYLENE GLYCOL PEG4000 (Synonym)
C16 H34 O8
PJWQOENWHPEPKI-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.27 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.217
  • Space Group: P 31 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 69.27 α = 90.00
b = 69.27 β = 90.00
c = 79.66 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-08-10
  • Released Date: 2012-06-27
  • Deposition author(s): Zhang, M., Zhang, Y.

Revision History

  • 2012-09-05
    Type: Citation | Details: Citation update