Crystal structure of broadly and potently neutralizing antibody VRC-PG04 in complex with HIV-1 gp120 DOI:10.2210/pdb3se9/pdb

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Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Viral Protein/immune System Structure Weight: 90841.89 Molecule: HIV-1 Clade AE strain 93TH057 gp120 Polymer: 1 Type: protein Length: 353 Chains: G Fragment: Core gp120 with trancations Organism Human immunodeficiency virus 1 Gene Name env UniProtKB:   Protein Feature View | Search PDB | Q0ED31     Molecule: Heavy chain of antibody VRC-PG04 Polymer: 2 Type: protein Length: 228 Chains: H Fragment: Antigen binding fragement of heavy chain Organism Homo sapiens Molecule: Light chain of antibody VRC-PG04 Polymer: 3 Type: protein Length: 208 Chains: L Fragment: antibody light chain Organism Homo sapiens     Source Hide Polymer: 1 Scientific Name: Human immunodeficiency virus 1   Taxonomy   Expression System: Homo sapiens   Polymer: 2 Scientific Name: Homo sapiens   Taxonomy   Expression System: Homo sapiens   Polymer: 3 Scientific Name: Homo sapiens   Taxonomy   Expression System: Homo sapiens       Related PDB Entries Hide Identifier Details 3NGB  Antibody VRC01 isolated from another donor      Ligand Chemical Component Hide Identifier Formula Name Interactions BU3 Search  Download  C4 H10 O2 (R,R)-2,3-BUTANEDIOL   Ligand Explorer CL Search  Download  Cl CHLORIDE ION   Ligand Explorer GOL Search  Download  C3 H8 O3 GLYCEROL   Ligand Explorer NAG Search  Download  C8 H15 N O6 N-ACETYL-D-GLUCOSAMINE   Ligand Explorer SO4 Search  Download  O4 S SULFATE ION   Ligand Explorer TRS Search  Download  C4 H12 N O3 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL   Ligand Explorer     External Domain Annotations Hide Pfam Classification: 10 Domains - data from Pfam       Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Kwong, P.D.,  Zhou, T. Deposition:   2011-06-10 Release:   2011-08-10 Last Modified (REVDAT):   2011-10-05     Revision History    Hide Mouse over text for details 2011-10-05 Citation     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   2.00 R-Value: 0.192 (obs.) R-Free: 0.233 Space Group: P 21 21 21 Unit Cell:   Length [Å] Angles [°] a = 61.80 α = 90.00  b = 66.48 β = 90.00  c = 237.30 γ = 90.00      Molecule of the Month Hide Epidermal Growth Factor Nanobodies Antibodies Hemagglutinin