3S43

HIV-1 protease triple mutants V32I, I47V, V82I with antiviral drug amprenavir

Structural Biology Knowledgebase: 3S43 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.26 Å
  • R-Value Free: 0.200
  • R-Value Work: 0.160

Literature

Macromolecules
Sequence Display for 3S43

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 24357.80

Macromolecule Entities
Molecule Chains Length Organism Details
Protease A 99 Human immunodeficiency virus 1 EC#: 3.4.23.16 IUBMB
Mutation: Q7K, V32I, L33I, I47V, L63I, C67A, Y69H, S95A
Gene Name(s): pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Protease B 99 Human immunodeficiency virus 1 Mutation: Q107K, V132I, L133I, I147V, L163I, C167A, Y169H, S195A
Gene Name(s): pol

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
478
Query on 478

A {3-[(4-AMINO-BENZENESULFONYL)-ISOBUTYL-AMINO]- 1-BENZYL-2-HYDROXY-PROPYL}-CARBAMIC ACID TETRAHYDRO- FURAN-3-YL ESTER
Amprenavir (Synonym)
C25 H35 N3 O6 S
YMARZQAQMVYCKC-OEMFJLHTSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IOD
Query on IOD

A, B IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.26 Å
  • R-Value Free: 0.200
  • R-Value Work: 0.160
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 58.37 α = 90.00
b = 86.57 β = 90.00
c = 46.31 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-05-18
  • Released Date: 2012-03-21
  • Deposition author(s): Wang, Y.-F., Tie, Y.-F., Weber, I.T.

Revision History

No revisions since initial release