3RUB

CRYSTAL STRUCTURE OF THE UNACTIVATED FORM OF RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE(SLASH)OXYGENASE FROM TOBACCO REFINED AT 2.0-ANGSTROMS RESOLUTION

Structural Biology Knowledgebase: 3RUB SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Observed: 0.171

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3RUB

Classification: LYASE(CARBON-CARBON)

Total Structure Weight: 68035.84

Macromolecule Entities
Molecule Chains Length Organism Details
RIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE, FORM III L 477 Nicotiana tabacum EC#: 4.1.1.39 IUBMB
Mutation: E377V, G405M
Gene Name(s): rbcL rbcA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE, FORM III S 123 Nicotiana tabacum EC#: 4.1.1.39 IUBMB
Gene Name(s): RBCS
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ASN
Query on ASN

L ASPARAGINE
C4 H8 N2 O3
DCXYFEDJOCDNAF-REOHCLBHSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

L SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Observed: 0.171
  • Space Group: I 4 2 2

Unit Cell:

Length (Å) Angle (°)
a = 148.70 α = 90.00
b = 148.70 β = 90.00
c = 137.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1990-05-25
  • Released Date: 1992-10-15
  • Deposition author(s): Schreuder, H., Cascio, D., Curmi, P.M.G., Chapman, M.S., Suh, S.W., Eisenberg, D.S.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4