3RGP

Structural and Kinetic Analysis of the Beef liver Catalase complexed with Nitric Oxide

Structural Biology Knowledgebase: 3RGP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.88 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.180

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3RGP

Classification: OXIDOREDUCTASE

Total Structure Weight: 230099.22

Macromolecule Entities
Molecule Chains Length Organism Details
Catalase A, B, C, D 499 Bos taurus EC#: 1.11.1.6 IUBMB
Fragment: unp residues 4-502
Gene Name(s): CAT Gene View

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A, B, C, D PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NO
Query on NO

A, B, C, D NITRIC OXIDE
Nitrogen monoxide (Synonym)
N O
ODUCDPQEXGNKDN-UHFFFAOYAM
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.88 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.180
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 86.11 α = 90.00
b = 139.94 β = 90.00
c = 228.02 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-04-08
  • Released Date: 2011-05-11
  • Deposition author(s): Purwar, N., Schmidt, M

Revision History

  • 2014-10-29
    Type: Entry authorship | Details: --
  • 2012-04-04
    Type: Citation | Details: Citation update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4