3QH1

Structure of Thermolysin in complex with N-benzyloxycarbonyl-L-aspartic acid

Structural Biology Knowledgebase: 3QH1 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.150
  • R-Value Work: 0.113

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3QH1

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 34853.57

Macromolecule Entities
Molecule Chains Length Organism Details
Thermolysin A 316 Bacillus thermoproteolyticus EC#: 3.4.24.27 IUBMB
Gene Name(s): npr
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NX6
Query on NX6

A N-[(benzyloxy)carbonyl]-L-aspartic acid
C12 H13 N O6
XYXYXSKSTZAEJW-VIFPVBQESA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.150
  • R-Value Work: 0.113
  • Space Group: P 61 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 92.50 α = 90.00
b = 92.50 β = 90.00
c = 130.10 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-01-25
  • Released Date: 2012-01-04
  • Deposition author(s): Birrane, G., Bhyravbhatla, B., Navia, M.

Revision History

  • 2014-07-02
    Type: Citation | Details: Citation update
  • 2014-04-30
    Type: Citation | Details: citation update