Download MendeleyHuman DNA polymerase iota incorporating dTTP opposite 8-oxo-guanine
Kirouac, K.N., Ling, H.To be published.
3Q8S
Human DNA polymerase iota incorporating dTTP opposite 8-oxo-guanine
- PDB DOI: https://doi.org/10.2210/pdb3Q8S/pdb
- NAKB: 3Q8S
- Classification: Transferase/DNA
- Organism(s): Homo sapiens, synthetic construct
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2011-01-06 Released: 2011-02-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.09 Å
- R-Value Free: 0.266
- R-Value Work: 0.227
- R-Value Observed: 0.228
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| DNA polymerase iota | A [auth B] | 420 | Homo sapiens | Mutation(s): 0 Gene Names: POLI, RAD30B EC: 2.7.7.7 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9UNA4 (Homo sapiens) Explore Q9UNA4 Go to UniProtKB: Q9UNA4 | |||||
PHAROS: Q9UNA4 GTEx: ENSG00000101751 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9UNA4 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| DNA (5'-D(*TP*CP*AP*(8OG)P*GP*GP*GP*TP*CP*CP*T)-3') | B [auth T] | 11 | synthetic construct |  | |
Sequence AnnotationsExpand | |||||
| |||||
Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| DNA (5'-D(P*AP*GP*GP*AP*CP*CP*C)-3') | C [auth P] | 7 | synthetic construct |  | |
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| TTP Query on TTP | F [auth B] | THYMIDINE-5'-TRIPHOSPHATE C10 H17 N2 O14 P3 NHVNXKFIZYSCEB-XLPZGREQSA-N |  | ||
| MG Query on MG | D [auth B], E [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.09 Å
- R-Value Free: 0.266
- R-Value Work: 0.227
- R-Value Observed: 0.228
- Space Group: P 65 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 97.494 | α = 90 |
| b = 97.494 | β = 90 |
| c = 201.899 | γ = 120 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| PHASER | phasing |
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2011-02-23 Deposition Author(s): Kirouac, K.N., Ling, H.
Revision History (Full details and data files)
- Version 1.0: 2011-02-23
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2011-11-16
Changes: Atomic model - Version 1.3: 2024-02-21
Changes: Data collection, Database references, Derived calculations
