3PG3

Human p38 MAP Kinase in Complex with RL182

Structural Biology Knowledgebase: 3PG3 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.220

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3PG3

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 42018.39

Macromolecule Entities
Molecule Chains Length Organism Details
Mitogen-activated protein kinase 14 A 360 Homo sapiens EC#: 2.7.11.24 IUBMB
Mutation: C119S, C162S, A172C, F327L
Gene Name(s): MAPK14 Gene View CSBP CSBP1 CSBP2 CSPB1 MXI2 SAPK2A

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DG7
Query on DG7

A 1-[3-tert-butyl-1-(4-methylphenyl)-1H-pyrazol- 5-yl]-3-{4-[2-(pyridin-3-ylmethoxy)ethyl]- 1,3-thiazol-2-yl}urea
1-(3-tert-butyl-1-p-tolyl-1H-pyrazol-5-yl)- 3-(4-(2-(pyridin-3-ylmethoxy)ethyl)thiazol- 2-yl)urea (Synonym)
C26 H30 N6 O2 S
FNKUETGWXHXSHJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BOG
Query on BOG

A B-OCTYLGLUCOSIDE
C14 H28 O6
HEGSGKPQLMEBJL-RKQHYHRCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
DG7 IC50: 3641 nM (98) BindingDB
Kd: 1656 nM (98) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.220
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 69.11 α = 90.00
b = 69.97 β = 90.00
c = 74.53 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-10-29
  • Released Date: 2011-11-02
  • Deposition author(s): Gruetter, C., Simard, J.R., Getlik, M., Rauh, D.

Revision History

No revisions since initial release