3P7U

Radiation damage study of thermolysin - 160K structure B (2.4 MGy)

Structural Biology Knowledgebase: 3P7U SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.199
  • R-Value Work: 0.145

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3P7U

Classification: HYDROLASE

Total Structure Weight: 34588.31

Macromolecule Entities
Molecule Chains Length Organism Details
Thermolysin E 316 Bacillus thermoproteolyticus EC#: 3.4.24.27 IUBMB
Fragment: UNP residues 233-548
Mutation: N37D, Q119E
Gene Name(s): npr
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

E ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

E CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.199
  • R-Value Work: 0.145
  • Space Group: P 61 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 93.75 α = 90.00
b = 93.75 β = 90.00
c = 128.84 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-10-12
  • Released Date: 2010-12-08
  • Deposition author(s): Juers, D.H., Weik, M.

Revision History

  • 2015-03-25
    Type: Other | Details: re-order the coordinates
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4