3P7C

p38 inhibitor-bound

Structural Biology Knowledgebase: 3P7C SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.292
  • R-Value Work: 0.234

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3P7C

Classification: transferase / transferase inhibitor

Total Structure Weight: 42947.30

Macromolecule Entities
Molecule Chains Length Organism Details
Mitogen-activated protein kinase 14 A 366 Mus musculus EC#: 2.7.11.24 IUBMB
Gene Name(s): Mapk14 Crk1 Csbp1 Csbp2

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
P7C
Query on P7C

A 1-[5-tert-butyl-3-({4-[2-(dimethylamino)ethyl]- 5-oxo-1,4-diazepan-1-yl}carbonyl)thiophen- 2-yl]-3-(2,3-dichlorophenyl)urea
C25 H33 Cl2 N5 O3 S
SIUIQMQVKUUQQF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BOG
Query on BOG

A B-OCTYLGLUCOSIDE
C14 H28 O6
HEGSGKPQLMEBJL-RKQHYHRCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
P7C IC50: 22 nM (99) BindingDB

IC50: 22 nM  BindingMOAD
IC50: 22 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.292
  • R-Value Work: 0.234
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 66.86 α = 90.00
b = 70.77 β = 90.00
c = 76.13 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-10-12
  • Released Date: 2011-10-12
  • Deposition author(s): Moffett, K.K., Namboodiri, H.

Revision History

  • 2012-01-25
    Type: Citation | Details: Citation update
  • 2011-11-09
    Type: Citation | Details: Citation update