3P78

P38 inhibitor-bound

Structural Biology Knowledgebase: 3P78 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.313
  • R-Value Work: 0.241

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3P78

Classification: transferase / transferase inhibitor

Total Structure Weight: 42878.38

Macromolecule Entities
Molecule Chains Length Organism Details
Mitogen-activated protein kinase 14 A 366 Mus musculus EC#: 2.7.11.24 IUBMB
Gene Name(s): Mapk14 Crk1 Csbp1 Csbp2

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
P78
Query on P78

A 1-{5-tert-butyl-3-[(1,1-dioxidothiomorpholin- 4-yl)carbonyl]thiophen-2-yl}-3-naphthalen- 2-ylurea
C24 H27 N3 O4 S2
AKQQWIZLJKLJED-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BOG
Query on BOG

A B-OCTYLGLUCOSIDE
C14 H28 O6
HEGSGKPQLMEBJL-RKQHYHRCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
P78 IC50: 110 nM (99) BindingDB

IC50: 110 nM  BindingMOAD
IC50: 110 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.313
  • R-Value Work: 0.241
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 68.81 α = 90.00
b = 70.99 β = 90.00
c = 76.05 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-10-12
  • Released Date: 2011-10-12
  • Deposition author(s): Moffett, K.K., Namboodiri, H.

Revision History

  • 2012-01-25
    Type: Citation | Details: Citation update
  • 2011-11-09
    Type: Citation | Details: Citation update