3ODM

Archaeal-type phosphoenolpyruvate carboxylase

Structural Biology Knowledgebase: 3ODM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.178

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3ODM

Classification: LYASE

Total Structure Weight: 516282.30

Macromolecule Entities
Molecule Chains Length Organism Details
Phosphoenolpyruvate carboxylase A, B, C..., D, E, F, G, HA, B, C, D, E, F, G, H 560 Clostridium perfringens EC#: 4.1.1.31 IUBMB
Gene Name(s): ppcA CPE1094

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AUC
Query on AUC

A, B, C, D, E, F, G, H GOLD (I) CYANIDE ION
C2 Au N2
DGOHFTDNMSZWDQ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MLI
Query on MLI

A, C, D, E, H MALONATE ION
C3 H2 O4
OFOBLEOULBTSOW-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.178
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 121.42 α = 90.00
b = 161.58 β = 90.00
c = 279.98 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-08-11
  • Released Date: 2011-02-02
  • Deposition author(s): Dunten, P.W.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4