3OAA

Structure of the E.coli F1-ATP synthase inhibited by subunit Epsilon

Structural Biology Knowledgebase: 3OAA SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.26 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.243

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3OAA

Classification: Hydrolase / Transport protein

Total Structure Weight: 1461935.13

Macromolecule Entities
Molecule Chains Length Organism Details
ATP synthase subunit alpha A, B, C..., I, J, K, Q, R, S, Y, Z, aA, B, C, I, J, K, Q, R, S, Y, Z, a 513 Escherichia coli EC#: 3.6.3.14 IUBMB
Gene Name(s): atpA papA uncA b3734 JW3712
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
ATP synthase subunit beta D, E, F..., L, M, N, T, U, V, b, c, dD, E, F, L, M, N, T, U, V, b, c, d 459 Escherichia coli EC#: 3.6.3.14 IUBMB
Mutation: K81E
Gene Name(s): atpD papB uncD b3732 JW3710
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
ATP synthase gamma chain G, O, W, e 286 Escherichia coli Gene Name(s): atpG papC uncG b3733 JW3711
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
ATP synthase epsilon chain H, P, X, f 138 Escherichia coli Gene Name(s): atpC papG uncC b3731 JW3709
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: F-type ATPase

Protein Name: F1-ATPase in an autoinhibited conformation


Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ANP
Query on ANP

A, B, C, I, J, K, Q, R, S, Y, Z, a PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ADP
Query on ADP

D, L, T, b ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

D, E, F, G, H, L, M, N, O, P, T, U, V, W, b, c, d SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C, D, I, J, K, L, Q, R, S, T, Y, Z, a, b MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.26 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.243
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 435.97 α = 90.00
b = 183.00 β = 108.99
c = 225.39 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-08-05
  • Released Date: 2011-05-25
  • Deposition author(s): Cingolani, G., Duncan, T.M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4