3O9J

Influenza NA in complex with compound 5

Structural Biology Knowledgebase: 3O9J SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.215

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3O9J

Classification: HYDROLASE

Total Structure Weight: 43432.01

Macromolecule Entities
Molecule Chains Length Organism Details
Neuraminidase A 387 Influenza a virus EC#: 3.2.1.18 IUBMB
Fragment: UNP Residues 81-467
Mutation: G296N
Gene Name(s): NA

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RP6
Query on RP6

A 5-(acetylamino)-2,6-anhydro-3,5-dideoxy-3- prop-2-en-1-yl-D-glycero-D-galacto-non-2- enonic acid
C14 H21 N O8
OXBQHTTZDDRTNB-BZNQNGANSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NDG
Query on NDG

A 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
C8 H15 N O6
OVRNDRQMDRJTHS-PVFLNQBWSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.215
  • Space Group: I 4
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 90.58 α = 90.00
b = 90.58 β = 90.00
c = 109.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-08-04
  • Released Date: 2010-12-15
  • Deposition author(s): Russell, R.J., Kerry, P.S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4