3O3C

Glycogen synthase basal state UDP complex

Structural Biology Knowledgebase: 3O3C SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.51 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.219

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3O3C

Classification: TRANSFERASE

Total Structure Weight: 331127.25

Macromolecule Entities
Molecule Chains Length Organism Details
Glycogen [starch] synthase isoform 2 A, B, C, D 725 Saccharomyces cerevisiae EC#: 2.4.1.11 IUBMB
Mutation: A535S, R580A, R581A, R583A
Gene Name(s): GSY2 YLR258W L8479.8
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
UDP
Query on UDP

A, B, C, D URIDINE-5'-DIPHOSPHATE
C9 H14 N2 O12 P2
XCCTYIAWTASOJW-XVFCMESISA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, C, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.51 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.219
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 96.59 α = 90.00
b = 167.21 β = 102.66
c = 121.25 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-07-23
  • Released Date: 2010-10-06
  • Deposition author(s): Baskaran, S., Hurley, T.D.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4