Yeast 80S ribosome. This entry consists of the 40S subunit of the first 80S in the asymmetric unit. DOI:10.2210/pdb3o2z/pdb   NDB ID: NA0650

3O2Z   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Split Entry The asymmetric unit for this structure is composed of multiple PDB entries: 3O2Z   3O30   3O58   3O5H     Download All Files      Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Ribosome Structure Weight: 1074926.14 Molecule: 18S ribosomal RNA Polymer: 1 Type: rna Length: 1800 Chains: 1 Organism Saccharomyces cerevisiae Molecule: 40S ribosomal protein S0-A Polymer: 2 Type: protein Length: 252 Chains: A Organism Saccharomyces cerevisiae Gene Names RPS0A NAB1 NAB1A YST1 YGR214W UniProtKB:   Protein Feature View | Search PDB | P32905     Molecule: 40S ribosomal protein S2 Polymer: 3 Type: protein Length: 254 Chains: B Organism Saccharomyces cerevisiae Gene Names RPS2 RPS4 SUP38 SUP44 YGL123W G2893 UniProtKB:   Protein Feature View | Search PDB | P25443     Molecule: 40S ribosomal protein S3 Polymer: 4 Type: protein Length: 240 Chains: C Organism Saccharomyces cerevisiae Gene Names RPS3 SUF14 YNL178W N1653 UniProtKB:   Protein Feature View | Search PDB | P05750     Molecule: 40S ribosomal protein S5 Polymer: 5 Type: protein Length: 225 Chains: D Organism Saccharomyces cerevisiae Gene Names RPS5 RPS2 YJR123W J2045 UniProtKB:   Protein Feature View | Search PDB | P26783     Molecule: 40S ribosomal protein S9-A Polymer: 6 Type: protein Length: 197 Chains: E Organism Saccharomyces cerevisiae Gene Names RPS9A RPS13A YS11A YPL081W UniProtKB:   Protein Feature View | Search PDB | O13516     Molecule: 40S ribosomal protein S11 Polymer: 7 Type: protein Length: 156 Chains: F Organism Saccharomyces cerevisiae Gene Names RPS11A RPS18A YDR025W YD9813.03 UniProtKB:   Protein Feature View | Search PDB | P0CX47     Molecule: 40S ribosomal protein S13 Polymer: 8 Type: protein Length: 151 Chains: G Organism Saccharomyces cerevisiae Gene Names RPS13 RPS13C YDR064W D4252 YD9609.18 UniProtKB:   Protein Feature View | Search PDB | P05756     Molecule: 40S ribosomal protein S14-A Polymer: 9 Type: protein Length: 137 Chains: H Organism Saccharomyces cerevisiae Gene Names RPS14A CRY1 RPL59 YCR031C YCR31C UniProtKB:   Protein Feature View | Search PDB | P06367     Molecule: 40S ribosomal protein S15 Polymer: 10 Type: protein Length: 142 Chains: I Organism Saccharomyces cerevisiae Gene Names RPS15 RPS21 YOL040C UniProtKB:   Protein Feature View | Search PDB | Q01855     Molecule: 40S ribosomal protein S16 Polymer: 11 Type: protein Length: 143 Chains: J Organism Saccharomyces cerevisiae Gene Names RPS16A RP61R YMR143W YM9375.12 UniProtKB:   Protein Feature View | Search PDB | P0CX51     Molecule: 40S ribosomal protein S17-A Polymer: 12 Type: protein Length: 136 Chains: K Organism Saccharomyces cerevisiae Gene Names RPS17A RP51A YML024W UniProtKB:   Protein Feature View | Search PDB | P02407     Molecule: 40S ribosomal protein S18 Polymer: 13 Type: protein Length: 146 Chains: L Organism Saccharomyces cerevisiae Gene Names RPS18A YDR450W D9461.35 UniProtKB:   Protein Feature View | Search PDB | P0CX55     Molecule: 40S ribosomal protein S19-A Polymer: 14 Type: protein Length: 144 Chains: M Organism Saccharomyces cerevisiae Gene Names RPS19A RP55A RPS16AA YOL121C UniProtKB:   Protein Feature View | Search PDB | P07280     Molecule: 40S ribosomal protein S20 Polymer: 15 Type: protein Length: 121 Chains: N Organism Saccharomyces cerevisiae Gene Names RPS20 URP2 YHL015W UniProtKB:   Protein Feature View | Search PDB | P38701     Molecule: 40S ribosomal protein S22-A Polymer: 16 Type: protein Length: 130 Chains: O Organism Saccharomyces cerevisiae Gene Names RPS22A RPS24 RPS24A YJL190C J0355 UniProtKB:   Protein Feature View | Search PDB | P0C0W1     Molecule: 40S ribosomal protein S23 Polymer: 17 Type: protein Length: 145 Chains: P Organism Saccharomyces cerevisiae Gene Names RPS23A RPS28A YGR118W G6178 UniProtKB:   Protein Feature View | Search PDB | P0CX29     Molecule: 40S ribosomal protein S25-A Polymer: 18 Type: protein Length: 108 Chains: Q Organism Saccharomyces cerevisiae Gene Names RPS25A RPS31A YGR027C UniProtKB:   Protein Feature View | Search PDB | Q3E792     Molecule: 40S ribosomal protein S28-A Polymer: 19 Type: protein Length: 67 Chains: R Organism Saccharomyces cerevisiae Gene Names RPS28A RPS33 RPS33A YOR167C O3600 UniProtKB:   Protein Feature View | Search PDB | Q3E7X9     Molecule: 40S ribosomal protein S29-A Polymer: 20 Type: protein Length: 56 Chains: S Organism Saccharomyces cerevisiae Gene Names RPS29A RPS36A YS29A YLR388W L8084.11 UniProtKB:   Protein Feature View | Search PDB | P41057     Molecule: Guanine nucleotide-binding protein subunit beta-like protein; RACK-1 Polymer: 21 Type: protein Length: 319 Chains: T Organism Saccharomyces cerevisiae Gene Names ASC1 CPC2 YMR116C YM9718.15C UniProtKB:   Protein Feature View | Search PDB | P38011     Molecule: Unassigned secondary structure Polymer: 22 Type: protein Length: 20 Chains: a Organism Saccharomyces cerevisiae Molecule: Unassigned secondary structure Polymer: 23 Type: protein Length: 105 Chains: b Organism Saccharomyces cerevisiae Molecule: Unassigned secondary structure Polymer: 24 Type: protein Length: 93 Chains: c Organism Saccharomyces cerevisiae Molecule: Unassigned secondary structure Polymer: 25 Type: protein Length: 35 Chains: d Organism Saccharomyces cerevisiae Molecule: Unassigned secondary structure Polymer: 26 Type: protein Length: 21 Chains: e Organism Saccharomyces cerevisiae Molecule: Unassigned secondary structure Polymer: 27 Type: protein Length: 11 Chains: f Organism Saccharomyces cerevisiae Molecule: Unassigned secondary structure Polymer: 28 Type: protein Length: 41 Chains: h Organism Saccharomyces cerevisiae     Source Hide Polymer: 1 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast   Polymer: 2 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast   Polymer: 3 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast   Polymer: 4 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast   Polymer: 5 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast   Polymer: 6 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast   Polymer: 7 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast   Polymer: 8 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast   Polymer: 9 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast   Polymer: 10 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast   Polymer: 11 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast   Polymer: 12 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast   Polymer: 13 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast   Polymer: 14 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast   Polymer: 15 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast   Polymer: 16 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast   Polymer: 17 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast   Polymer: 18 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast   Polymer: 19 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast   Polymer: 20 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast   Polymer: 21 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast   Polymer: 22 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast   Polymer: 23 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast   Polymer: 24 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast   Polymer: 25 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast   Polymer: 26 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast   Polymer: 27 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast   Polymer: 28 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast       Ligand Chemical Component Hide Identifier Formula Name Interactions OHX Search  Download  H12 N6 Os osmium (III) hexammine   Ligand Explorer     Modified Residues Hide Identifier Formula Parent Type UNK Search  C4 H9 N O2 lPeptideLinking     External Domain Annotations Hide Pfam Classification: 30 Domains - data from Pfam   GO Terms: 240 Terms - data from GO      Structural Biology Knowledgebase Data Hide   Nucleic Acid Database Hide View the NDB ID associated with this structure: NA0650     Data in orange boxes are gathered from external resources (when available). 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Biological Assembly            View in 3D More Images... Composite of PDB entries (3O2Z and 3O58)         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Ben-Shem, A.,  Jenner, L.,  Yusupova, G.,  Yusupov, M. Deposition:   2010-07-23 Release:   2010-12-15 Last Modified (REVDAT):   2010-12-22     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors Resolution[Å]:   4.00 R-Value: 0.280 (obs.) R-Free: 0.341 Space Group: P 21 Unit Cell:   Length [Å] Angles [°] a = 437.11 α = 90.00  b = 288.38 β = 99.13  c = 306.56 γ = 90.00      Molecule of the Month Hide Ribosomal Subunits Ribosome Aminoglycoside Antibiotics Transfer-Messenger RNA