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Yeast 80S ribosome. This entry consists of the 40S subunit of the first 80S in the asymmetric unit.
DOI:10.2210/pdb3o2z/pdb   NDB ID: NA0650
3O2Z
Split Entry
The asymmetric unit for this structure is composed of multiple PDB entries:
3O2Z   3O30   3O58   3O5H  
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Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ribosome
    Structure Weight: 1074926.14
    Molecule: 18S ribosomal RNA
    Polymer: 1 Type: rna Length: 1800
    Chains: 1
    Organism Saccharomyces cerevisiae
    Molecule: 40S ribosomal protein S0-A
    Polymer: 2 Type: protein Length: 252
    Chains: A
    Organism Saccharomyces cerevisiae
    Gene Names RPS0A NAB1 NAB1A YST1 YGR214W
    UniProtKB:   Protein Feature View | Search PDB | P32905  
    Molecule: 40S ribosomal protein S2
    Polymer: 3 Type: protein Length: 254
    Chains: B
    Organism Saccharomyces cerevisiae
    Gene Names RPS2 RPS4 SUP38 SUP44 YGL123W G2893
    UniProtKB:   Protein Feature View | Search PDB | P25443  
    Molecule: 40S ribosomal protein S3
    Polymer: 4 Type: protein Length: 240
    Chains: C
    Organism Saccharomyces cerevisiae
    Gene Names RPS3 SUF14 YNL178W N1653
    UniProtKB:   Protein Feature View | Search PDB | P05750  
    Molecule: 40S ribosomal protein S5
    Polymer: 5 Type: protein Length: 225
    Chains: D
    Organism Saccharomyces cerevisiae
    Gene Names RPS5 RPS2 YJR123W J2045
    UniProtKB:   Protein Feature View | Search PDB | P26783  
    Molecule: 40S ribosomal protein S9-A
    Polymer: 6 Type: protein Length: 197
    Chains: E
    Organism Saccharomyces cerevisiae
    Gene Names RPS9A RPS13A YS11A YPL081W
    UniProtKB:   Protein Feature View | Search PDB | O13516  
    Molecule: 40S ribosomal protein S11
    Polymer: 7 Type: protein Length: 156
    Chains: F
    Organism Saccharomyces cerevisiae
    Gene Names RPS11B RPS18B YBR048W YBR0501
    UniProtKB:   Protein Feature View | Search PDB | P0CX48  
    Molecule: 40S ribosomal protein S13
    Polymer: 8 Type: protein Length: 151
    Chains: G
    Organism Saccharomyces cerevisiae
    Gene Names RPS13 RPS13C YDR064W D4252 YD9609.18
    UniProtKB:   Protein Feature View | Search PDB | P05756  
    Molecule: 40S ribosomal protein S14-A
    Polymer: 9 Type: protein Length: 137
    Chains: H
    Organism Saccharomyces cerevisiae
    Gene Names RPS14A CRY1 RPL59 YCR031C YCR31C
    UniProtKB:   Protein Feature View | Search PDB | P06367  
    Molecule: 40S ribosomal protein S15
    Polymer: 10 Type: protein Length: 142
    Chains: I
    Organism Saccharomyces cerevisiae
    Gene Names RPS15 RPS21 YOL040C
    UniProtKB:   Protein Feature View | Search PDB | Q01855  
    Molecule: 40S ribosomal protein S16
    Polymer: 11 Type: protein Length: 143
    Chains: J
    Organism Saccharomyces cerevisiae
    Gene Names RPS16A RP61R YMR143W YM9375.12
    UniProtKB:   Protein Feature View | Search PDB | P0CX51  
    Molecule: 40S ribosomal protein S17-A
    Polymer: 12 Type: protein Length: 136
    Chains: K
    Organism Saccharomyces cerevisiae
    Gene Names RPS17A RP51A YML024W
    UniProtKB:   Protein Feature View | Search PDB | P02407  
    Molecule: 40S ribosomal protein S18
    Polymer: 13 Type: protein Length: 146
    Chains: L
    Organism Saccharomyces cerevisiae
    Gene Names RPS18B YML026C
    UniProtKB:   Protein Feature View | Search PDB | P0CX56  
    Molecule: 40S ribosomal protein S19-A
    Polymer: 14 Type: protein Length: 144
    Chains: M
    Organism Saccharomyces cerevisiae
    Gene Names RPS19A RP55A RPS16AA YOL121C
    UniProtKB:   Protein Feature View | Search PDB | P07280  
    Molecule: 40S ribosomal protein S20
    Polymer: 15 Type: protein Length: 121
    Chains: N
    Organism Saccharomyces cerevisiae
    Gene Names RPS20 URP2 YHL015W
    UniProtKB:   Protein Feature View | Search PDB | P38701  
    Molecule: 40S ribosomal protein S22-A
    Polymer: 16 Type: protein Length: 130
    Chains: O
    Organism Saccharomyces cerevisiae
    Gene Names RPS22A RPS24 RPS24A YJL190C J0355
    UniProtKB:   Protein Feature View | Search PDB | P0C0W1  
    Molecule: 40S ribosomal protein S23
    Polymer: 17 Type: protein Length: 145
    Chains: P
    Organism Saccharomyces cerevisiae
    Gene Names RPS23A RPS28A YGR118W G6178
    UniProtKB:   Protein Feature View | Search PDB | P0CX29  
    Molecule: 40S ribosomal protein S25-A
    Polymer: 18 Type: protein Length: 108
    Chains: Q
    Organism Saccharomyces cerevisiae
    Gene Names RPS25A RPS31A YGR027C
    UniProtKB:   Protein Feature View | Search PDB | Q3E792  
    Molecule: 40S ribosomal protein S28-A
    Polymer: 19 Type: protein Length: 67
    Chains: R
    Organism Saccharomyces cerevisiae
    Gene Names RPS28A RPS33 RPS33A YOR167C O3600
    UniProtKB:   Protein Feature View | Search PDB | Q3E7X9  
    Molecule: 40S ribosomal protein S29-A
    Polymer: 20 Type: protein Length: 56
    Chains: S
    Organism Saccharomyces cerevisiae
    Gene Names RPS29A RPS36A YS29A YLR388W L8084.11
    UniProtKB:   Protein Feature View | Search PDB | P41057  
    Molecule: Guanine nucleotide-binding protein subunit beta-like protein; RACK-1
    Polymer: 21 Type: protein Length: 319
    Chains: T
    Organism Saccharomyces cerevisiae
    Gene Names ASC1 CPC2 YMR116C YM9718.15C
    UniProtKB:   Protein Feature View | Search PDB | P38011  
    Molecule: Unassigned secondary structure
    Polymer: 22 Type: protein Length: 20
    Chains: a
    Organism Saccharomyces cerevisiae
    Molecule: Unassigned secondary structure
    Polymer: 23 Type: protein Length: 105
    Chains: b
    Organism Saccharomyces cerevisiae
    Molecule: Unassigned secondary structure
    Polymer: 24 Type: protein Length: 93
    Chains: c
    Organism Saccharomyces cerevisiae
    Molecule: Unassigned secondary structure
    Polymer: 25 Type: protein Length: 35
    Chains: d
    Organism Saccharomyces cerevisiae
    Molecule: Unassigned secondary structure
    Polymer: 26 Type: protein Length: 21
    Chains: e
    Organism Saccharomyces cerevisiae
    Molecule: Unassigned secondary structure
    Polymer: 27 Type: protein Length: 11
    Chains: f
    Organism Saccharomyces cerevisiae
    Molecule: Unassigned secondary structure
    Polymer: 28 Type: protein Length: 41
    Chains: h
    Organism Saccharomyces cerevisiae
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 2
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 3
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 4
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 5
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 6
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 7
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 8
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 9
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 10
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 11
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 12
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 13
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 14
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 15
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 16
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 17
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 18
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 19
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 20
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 21
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 22
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 23
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 24
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 25
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 26
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 27
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 28
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    OHX
    Search 
    Download 
    OHX H12 N6 Os
    osmium (III) hexammine
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    UNK
    Search 
    UNK C4 H9 N O2 lPeptideLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA0650
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Composite of PDB entries (3O2Z and 3O58)