3NTP

Human Pin1 complexed with reduced amide inhibitor

Structural Biology Knowledgebase: 3NTP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.76 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.231

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3NTP

Classification: Isomerase / Isomerase inhibitor

Total Structure Weight: 19347.58

Macromolecule Entities
Molecule Chains Length Organism Details
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 A 167 Homo sapiens EC#: 5.2.1.8 IUBMB
Mutation: R14A
Gene Name(s): PIN1 Gene View

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RZD
Query on RZD

A (2R)-2-(acetylamino)-3-[(2S)-2-{[2-(1H-indol- 3-yl)ethyl]carbamoyl}pyrrolidin-1-yl]propyl dihydrogen phosphate
C20 H29 N4 O6 P
FDBFLFSQEGXOJR-APWZRJJASA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PE8
Query on PE8

A 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23- DIOL
C16 H34 O9
GLZWNFNQMJAZGY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
RZD N/A in BindingDB
IC50: 12000 nM  BindingMOAD
IC50: 12000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.76 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.231
  • Space Group: P 31 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 68.85 α = 90.00
b = 68.85 β = 90.00
c = 79.78 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-07-05
  • Released Date: 2012-01-04
  • Deposition author(s): Zhang, Y.

Revision History

No revisions since initial release