3NNO
Crystal structure of the complex of peptidoglycan recognition protein (PGRP-S) with Alpha-Rhamnose at 2.9 A resolution
- PDB DOI: https://doi.org/10.2210/pdb3NNO/pdb
- Classification: ANTIBIOTIC
- Organism(s): Camelus dromedarius
- Mutation(s): No 
- Deposited: 2010-06-24 Released: 2010-07-21 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.90 Å
- R-Value Free: 0.193 
- R-Value Work: 0.185 
- R-Value Observed: 0.185 
This is version 1.3 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Peptidoglycan recognition protein 1 | 171 | Camelus dromedarius | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for Q9GK12 (Camelus dromedarius) Explore Q9GK12  Go to UniProtKB:  Q9GK12 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9GK12 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
RAM Query on RAM | F [auth D] | alpha-L-rhamnopyranose C6 H12 O5 SHZGCJCMOBCMKK-HGVZOGFYSA-N | |||
TLA Query on TLA | E [auth C] | L(+)-TARTARIC ACID C4 H6 O6 FEWJPZIEWOKRBE-JCYAYHJZSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.90 Å
- R-Value Free: 0.193 
- R-Value Work: 0.185 
- R-Value Observed: 0.185 
- Space Group: I 2 2 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 90.25 | α = 90 |
b = 101.9 | β = 90 |
c = 164.08 | γ = 90 |
Software Name | Purpose |
---|---|
DENZO | data reduction |
AMoRE | phasing |
CNS | refinement |
AUTOMAR | data reduction |
SCALEPACK | data scaling |
Entry History 
Deposition Data
- Released Date: 2010-07-21  Deposition Author(s): Dube, D., Sharma, P., Sinha, M., Kaur, P., Sharma, S., Singh, T.P.
Revision History (Full details and data files)
- Version 1.0: 2010-07-21
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary - Version 1.3: 2023-11-01
Changes: Data collection, Database references, Refinement description, Structure summary