3N80

Human mitochondrial aldehyde dehydrogenase, apo form

Structural Biology Knowledgebase: 3N80 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.175
  • R-Value Work: 0.149

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3N80

Classification: OXIDOREDUCTASE

Total Structure Weight: 439789.77

Macromolecule Entities
Molecule Chains Length Organism Details
Aldehyde dehydrogenase, mitochondrial A, B, C..., D, E, F, G, HA, B, C, D, E, F, G, H 500 Homo sapiens EC#: 1.2.1.3 IUBMB
Fragment: Mature sequence, residues 18-517
Gene Name(s): ALDH2 Gene View ALDM

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A, B, C, D, E, F, G, H 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GAI
Query on GAI

A, B, C, D, E, F, G, H GUANIDINE
C H5 N3
ZRALSGWEFCBTJO-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

H MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

B, C, D, E, F, G, H SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CSO
Query on CSO
A, B, C, D, E, F, G, H L-PEPTIDE LINKING C3 H7 N O3 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.175
  • R-Value Work: 0.149
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 141.66 α = 90.00
b = 152.29 β = 90.00
c = 177.28 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-05-27
  • Released Date: 2011-04-13
  • Deposition author(s): Gonzalez-Segura, L., Hurley, T.D.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4