3L6X

Crystal structure of p120 catenin in complex with E-cadherin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.201

Literature

Macromolecules
Sequence Display for 3L6X

Classification: CELL ADHESION

Total Structure Weight: 67754.18

Macromolecule Entities
Molecule Chains Length Organism Details
Catenin delta-1 A 584 Homo sapiens Fragment: p120 catenin isoform 4A
Mutation: ΔP613, ΔH614, ΔA615, ΔA616, ΔS617, ΔC618, ΔF619, ΔG620, ΔA621, ΔK622, ΔK623, ΔG624, ΔK625, ΔD626, ΔE627, ΔW628, ΔF629, ΔS630, ΔR631, ΔG632, ΔK633, ΔK634, ΔP635, ΔI636, ΔE637, ΔD638, ΔP639, ΔA640, ΔN641, ΔD642, ΔT643, ΔV644, ΔD645, ΔF646, ΔP647, ΔK648, ΔR649
Gene Name(s): CTNND1 Gene View KIAA0384
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
E-cadherin B 18 Homo sapiens Fragment: E-cadherin juxtamembrane domain core region
Gene Name(s): CDH1 Gene View CDHE UVO
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.201
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 92.40 α = 90.00
b = 92.40 β = 90.00
c = 171.89 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-12-27
  • Released Date: 2010-04-21
  • Deposition author(s): Ishiyama, N., Lee, S.-H., Liu, S., Li, G.-Y., Smith, M.J., Reichardt, L.F., Ikura, M.

Revision History

  • Version 1_0: 2010-04-21

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Advisory, Refinement description, Version format compliance

  • Version 1_2: 2017-11-01

    Type: Refinement description