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Room temperature structure of D-Xylose Isomerase in complex with 2Ni(2+) co-factors and d12-D-glucose in the linear form
3KBN
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Isomerase
    Structure Weight: 43639.96
    Molecule: Xylose isomerase
    Polymer: 1 Type: protein Length: 388
    Chains: A
    EC#: 5.3.1.5   
    Details: THE PROTEIN WAS PURCHASED FROM HAMPTON RESEARCH
    Organism: Streptomyces rubiginosus
    Gene Name: xylA
    UniProtKB: Protein Feature View | Search PDB | P24300  
     
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  •   Source Hide
    Polymer: 1
    Scientific Name: Streptomyces rubiginosus   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    3KBJ  Room temperature X-ray structure of apo-D-Xylose Isomerase 
    3KBM  Room Temperature X-ray structure of D-Xylose Isomerase complexed with 2Cd(2+) co-factors and d12-D-alpha-glucose in the cyclic form 
    3KBS  Room Temperature X-ray structure of D-Xylose Isomerase in complex with 2Cd(2+) co-factors 
    3KBV  Room temperature structure of D-Xylose Isomerase in complex with 2Ni(2+) co-factors 
    3KBW  Room temperature X-ray mixed-metal structure of D-Xylose Isomerase in complex with Ni(2+) and Mg(2+) co-factors 
    3KCJ  Room temperature neutron structure of apo-D-Xylose Isomerase (refined jointly with X-ray structure 3KBJ) 
    3KCL  Room temperature neutron structure of D-Xylose Isomerase in complex with two Cd2+ cations and d12-D-alpha-glucose in the ring form (refined jointly with X-ray structure 3KBM) 
    3KCO  Room temperature neutron structure of D-Xylose Isomerase in complex with two Ni2+ cations and d12-D-glucose in the linear form (refined jointly with X-ray structure 3KBN) 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    GLO
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    GLO C6 H12 O6
    D-GLUCOSE IN LINEAR FORM
    GLO:3KBN
    NI
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    NI Ni
    NICKEL (II) ION
     
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  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Kovalevsky, A.Y.,  Hanson, L.,  Langan, P.

    Deposition:   2009-10-20
    Release:   2010-06-16
    Last Modified (REVDAT):   2012-03-07
     
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    2012-03-07
    Citation
    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.53
    R-Value: 0.138 (work)
    R-Free: 0.182
    Space Group: I 2 2 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 94.01 α = 90.00 
    b = 99.67 β = 90.00 
    c = 102.86 γ = 90.00