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Backbone model of an aquareovirus virion by cryo-electron microscopy and bioinformatics
3K1Q
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Virus
    Structure Weight: 1449529.00
    Molecule: VP1, the protein that forms the mRNA-capping machine
    Polymer: 1 Type: protein Length: 1299
    Chains: A
    Organism: Grass carp reovirus
    UniProtKB: Protein Feature View | Search PDB | Q9E3W0  
    Molecule: VP3A, the building block protein of inner shell
    Polymer: 2 Type: protein Length: 1027
    Chains: B
    Organism: Grass carp reovirus
    UniProtKB: Protein Feature View | Search PDB | Q9E3V8  
    Molecule: VP3B, the building block protein of inner shell
    Polymer: 3 Type: protein Length: 1196
    Chains: C
    Organism: Grass carp reovirus
    UniProtKB: Protein Feature View | Search PDB | Q9E3V8  
    Molecule: VP6A and VP6B, the clamping proteins
    Polymer: 4 Type: protein Length: 412
    Chains: D, E
    Organism: Grass carp reovirus
    UniProtKB: Protein Feature View | Search PDB | Q8JU64  
    Molecule: VP7: protector protein (outer shell)
    Polymer: 5 Type: protein Length: 276
    Chains: F, G, H, L, M, N, R, S, T, Y
    Organism: Grass carp reovirus
    UniProtKB: Protein Feature View | Search PDB | Q8JU63  
    Molecule: VP5: membrane-penetration protein (outer shell)
    Polymer: 6 Type: protein Length: 639
    Chains: I, J, K, O, P, Q, U, V, W, X
    Organism: Grass carp reovirus
    UniProtKB: Protein Feature View | Search PDB | Q8JU67  
     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Grass carp reovirus   Taxonomy    
    Polymer: 2
    Scientific Name: Grass carp reovirus   Taxonomy    
    Polymer: 3
    Scientific Name: Grass carp reovirus   Taxonomy    
    Polymer: 4
    Scientific Name: Grass carp reovirus   Taxonomy    
    Polymer: 5
    Scientific Name: Grass carp reovirus   Taxonomy    
    Polymer: 6
    Scientific Name: Grass carp reovirus   Taxonomy    
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
No info available for origin of biological assembly
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  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Cheng, L.P.,  Zhu, J.,  Hiu, W.H.,  Zhang, X.K.,  Honig, B.,  Fang, Q.,  Zhou, Z.H.

    Deposition:   2009-09-28
    Release:   2010-03-23
    Last Modified (REVDAT):   2010-03-31
     
  •   Revision History    Hide
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    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   ELECTRON MICROSCOPY
    Exp. Data:


    EM Resolution [Å]: 4.5
    Aggregation State: PARTICLE
    Symmetry Type: ICOSAHEDRAL Reconstruction Method: SINGLE PARTICLE
    Specimen Type: VITREOUS ICE (CRYO EM)