Crystal structure of the Mg-bound 3-keto-L-gulonate-6-phosphate decarboxylase from Vibrio cholerae O1 biovar El Tor str. N16961
Nocek, B., Maltseva, N., Stam, J., Anderson, W., Joachimiak, A., CSGIDTo be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Hexulose-6-phosphate synthase SgbH | 218 | Vibrio cholerae | Mutation(s): 0  Gene Names: VC_A0242 | ||
UniProt | |||||
Find proteins for Q9KMS8 (Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)) Explore Q9KMS8  Go to UniProtKB:  Q9KMS8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9KMS8 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SO4 Query on SO4 | BA [auth D] J [auth A] K [auth A] N [auth B] O [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
GOL Query on GOL | F [auth A], G [auth A], H [auth A], Y [auth D], Z [auth D] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
EDO Query on EDO | AA [auth D], E [auth A], I [auth A], R [auth C], S [auth C] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
MG Query on MG | CA [auth D] L [auth A] M [auth A] P [auth B] Q [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 82.305 | α = 90 |
b = 95.711 | β = 90 |
c = 125.577 | γ = 90 |
Software Name | Purpose |
---|---|
SBC-Collect | data collection |
MOLREP | phasing |
ARP/wARP | model building |
Coot | model building |
REFMAC | refinement |
HKL-3000 | data reduction |
HKL-3000 | data scaling |