Localization of the large subunit ribosomal proteins into a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome DOI:10.2210/pdb3izr/pdb EMDataBank  :1780

3IZR   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Biological Assembly (gz) (A)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

ENTRY 3IZR SUPERSEDES 3IZ5 Split Entry The asymmetric unit for this structure is composed of multiple PDB entries: 3IZ6   3IZ7   3IZ9   3IZR     Download All Files      Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Ribosome Structure Weight: 904079.38 Molecule: 60S ribosomal protein L1 (L1p) Polymer: 1 Type: protein Length: 216 Chains: A Organism Triticum aestivum UniProtKB:   Protein Feature View | Search PDB | Q5I7L3     Molecule: 60S ribosomal protein L2 (L2p) Polymer: 2 Type: protein Length: 261 Chains: B Organism Triticum aestivum Gene Names LOC_Os12g38000 Os12g0567700 OsJ_36548 UniProtKB:   Protein Feature View | Search PDB | Q2QNF3     Molecule: 60S ribosomal protein L11 (L5p) Polymer: 3 Type: protein Length: 180 Chains: E Organism Triticum aestivum UniProtKB:   Protein Feature View | Search PDB | Q5I7L2     Molecule: 60S ribosomal protein L9 (L6p) Polymer: 4 Type: protein Length: 190 Chains: F Organism Triticum aestivum Gene Names RPL9 YK426 Os09g0485900 LOC_Os09g31180 UniProtKB:   Protein Feature View | Search PDB | P49210     Molecule: 60S ribosomal protein L7a (L7ae) Polymer: 5 Type: protein Length: 258 Chains: H Organism Triticum aestivum Gene Names RPL7A Os08g0326400 LOC_Os08g23710 OJ1136_A10.108 P0703C03.43 UniProtKB:   Protein Feature View | Search PDB | P35685     Molecule: 60S ribosomal protein L23 (L14p) Polymer: 6 Type: protein Length: 140 Chains: M Organism Triticum aestivum UniProtKB:   Protein Feature View | Search PDB | Q7X9K1     Molecule: 60S ribosomal protein L15 (L15e) Polymer: 7 Type: protein Length: 204 Chains: P Organism Triticum aestivum Gene Names OJ1523_A02.2 Os03g0598800 OSJNBa0087M10.1 LOC_Os03g40180 Os05g0274700 OsJ_11650 UniProtKB:   Protein Feature View | Search PDB | Q8H8S1     Molecule: 60S ribosomal protein L27a (L15p) Polymer: 8 Type: protein Length: 144 Chains: O Organism Triticum aestivum Gene Names OJ1077_E05.13 Os02g0175600 UniProtKB:   Protein Feature View | Search PDB | Q6EUQ7     Molecule: 60S ribosomal protein L18 (L18e) Polymer: 9 Type: protein Length: 188 Chains: R Organism Triticum aestivum UniProtKB:   Protein Feature View | Search PDB | Q5I7L0     Molecule: 60S ribosomal protein L5 (L18p) Polymer: 10 Type: protein Length: 304 Chains: Q Organism Triticum aestivum Gene Names RPL5B Os01g0896700 LOC_Os01g67134 P0674H09.11 P0696G06.29 UniProtKB:   Protein Feature View | Search PDB | Q8L4L4     Molecule: 60S ribosomal protein L19 (L19e) Polymer: 11 Type: protein Length: 209 Chains: T Organism Triticum aestivum UniProtKB:   Protein Feature View | Search PDB | Q7XY20     Molecule: 60S ribosomal protein L21 (L21e) Polymer: 12 Type: protein Length: 164 Chains: U Organism Triticum aestivum Gene Name RPL21 UniProtKB:   Protein Feature View | Search PDB | F4YWL9     Molecule: 60S ribosomal protein L17 (L22p) Polymer: 13 Type: protein Length: 171 Chains: V Organism Triticum aestivum Gene Names B1279D09.8 Os09g0258600 P0523B07.46 OsJ_28568 UniProtKB:   Protein Feature View | Search PDB | Q6K1W6     Molecule: 60S ribosomal protein L23a (L23p) Polymer: 14 Type: protein Length: 152 Chains: X Organism Triticum aestivum Gene Names P0440D10.34 B1051E10.13 Os01g0348700 OsJ_01678 UniProtKB:   Protein Feature View | Search PDB | Q94CM9     Molecule: 60S ribosomal protein L24 (L24e) Polymer: 15 Type: protein Length: 162 Chains: Z Organism Triticum aestivum Gene Names OSJNBa0085D07.41 Os01g0815800 OsJ_03860 UniProtKB:   Protein Feature View | Search PDB | Q5N754     Molecule: 60S ribosomal protein L26 (L24p) Polymer: 16 Type: protein Length: 150 Chains: Y Organism Triticum aestivum Gene Names LOC_Os12g05430 Os12g0150100 OsJ_35234 UniProtKB:   Protein Feature View | Search PDB | Q2QXN5     Molecule: 60S ribosomal protein L28 (L28e) Polymer: 17 Type: protein Length: 147 Chains: b Organism Triticum aestivum Gene Name OJ1362_G11.15 UniProtKB:   Protein Feature View | Search PDB | Q5TKP3     Molecule: 60S ribosomal protein L29 (L29e) Polymer: 18 Type: protein Length: 60 Chains: d Organism Triticum aestivum Gene Names P0475H04.12 OSJNBa0036C12.10 Os01g0304000 Os05g0355500 OsJ_01455 OsJ_18199 UniProtKB:   Protein Feature View | Search PDB | Q9FP55     Molecule: 60S ribosomal protein L30 (L30e) Polymer: 19 Type: protein Length: 112 Chains: f Organism Triticum aestivum UniProtKB:   Protein Feature View | Search PDB | Q5I7K9     Molecule: 60S ribosomal protein L31 (L31e) Polymer: 20 Type: protein Length: 123 Chains: g Organism Triticum aestivum Gene Names OJ2056_H01.22-1 OsJ_08157 UniProtKB:   Protein Feature View | Search PDB | Q6ZGV5     Molecule: 60S ribosomal protein L32 (L32e) Polymer: 21 Type: protein Length: 133 Chains: h Organism Triticum aestivum Gene Names rpl32 OsI_31922 UniProtKB:   Protein Feature View | Search PDB | Q3MST7     Molecule: 60S ribosomal protein L37 (L37e) Polymer: 22 Type: protein Length: 94 Chains: l Organism Triticum aestivum Gene Names P0501G04.27 Os02g0111700 OsJ_05070 UniProtKB:   Protein Feature View | Search PDB | Q6Z8Y5     Molecule: 60S ribosomal protein L38 (L38e) Polymer: 23 Type: protein Length: 69 Chains: n Organism Triticum aestivum Gene Names OJ1612_A04.113 Os11g0433900 LOC_Os11g24610 OsJ_33784 UniProtKB:   Protein Feature View | Search PDB | Q8GVY2     Molecule: 60S ribosomal protein L39 (L39e) Polymer: 24 Type: protein Length: 51 Chains: o Organism Triticum aestivum UniProtKB:   Protein Feature View | Search PDB | Q5I7K7     Molecule: 60S ribosomal protein L42 (L44e) Polymer: 25 Type: protein Length: 105 Chains: r Organism Triticum aestivum Gene Names OJ1047_A06.130 Os07g0450000 Os07g0523500 UniProtKB:   Protein Feature View | Search PDB | Q8H5N0     Molecule: 60S ribosomal protein L41 (L41e) Polymer: 26 Type: protein Length: 25 Chains: q Organism Triticum aestivum Gene Names OJ1417_E01.123 OsJ_23041 UniProtKB:   Protein Feature View | Search PDB | Q8GVZ2     Molecule: Unknown 60S ribosomal protein XL Polymer: 27 Type: protein Length: 20 Chains: x, y Organism Triticum aestivum Molecule: Unknown 60S ribosomal protein XL3 Polymer: 28 Type: protein Length: 14 Chains: z Organism Triticum aestivum Molecule: 60S ribosomal protein L6 (L6e) Polymer: 29 Type: protein Length: 219 Chains: G Organism Triticum aestivum UniProtKB:   Protein Feature View | Search PDB | Q5I7L4     Molecule: 60S ribosomal protein L13 (L13e) Polymer: 30 Type: protein Length: 183 Chains: L Organism Triticum aestivum Molecule: 60S ribosomal protein L14 (L14e) Polymer: 31 Type: protein Length: 134 Chains: N Organism Triticum aestivum Gene Names OSJNOa283G08.1 OJ1234_B11.29 OsRPL14 UniProtKB:   Protein Feature View | Search PDB | Q6K1Q6     Molecule: 60S ribosomal protein L18a (L18ae) Polymer: 32 Type: protein Length: 178 Chains: S Organism Triticum aestivum Gene Names Os01g0752300 OsJ_03475 UniProtKB:   Protein Feature View | Search PDB | Q0JJA0     Molecule: 60S ribosomal protein L22 (L22e) Polymer: 33 Type: protein Length: 130 Chains: W Organism Triticum aestivum Gene Names P0037D09.3 P0618H09.1 Os07g0674200 OsJ_25551 UniProtKB:   Protein Feature View | Search PDB | Q6YSX0     Molecule: 60S ribosomal protein L27 (L27e) Polymer: 34 Type: protein Length: 136 Chains: a Organism Triticum aestivum Gene Names Os10g0564300 OSJNBa0027P10.10 LOC_Os10g41470 OsJ_32486 UniProtKB:   Protein Feature View | Search PDB | Q7XC31     Molecule: 60S ribosomal protein L34 (L34e) Polymer: 35 Type: protein Length: 119 Chains: i Organism Triticum aestivum UniProtKB:   Protein Feature View | Search PDB | Q5I7K8     Molecule: 60S ribosomal protein L35a (L35ae) Polymer: 36 Type: protein Length: 111 Chains: j Organism Triticum aestivum Gene Names OJ1214_E03.11 OJ1214_E03.3 Os05g0556900 OsJ_19494 UniProtKB:   Protein Feature View | Search PDB | Q6I608     Molecule: 60S ribosomal protein L36 (L36e) Polymer: 37 Type: protein Length: 112 Chains: k Organism Triticum aestivum UniProtKB:   Protein Feature View | Search PDB | Q5I7L5     Molecule: 60S ribosomal protein L40 (L40e) Polymer: 38 Type: protein Length: 53 Chains: p Organism Triticum aestivum UniProtKB:   Protein Feature View | Search PDB | Q7XYD4     Molecule: 60S ribosomal protein L12 (L11p) Polymer: 39 Type: protein Length: 166 Chains: J Organism Triticum aestivum Gene Names OSJNba0093F12.16 Os04g0598200 OsJ_16016 UniProtKB:   Protein Feature View | Search PDB | Q0JAI2     Molecule: 60S acidic ribosomal protein P11 - P1 (L12P) Polymer: 40 Type: protein Length: 110 Chains: t, u Organism Triticum aestivum UniProtKB:   Protein Feature View | Search PDB | Q5I7K5     Molecule: 60S acidic ribosomal protein P21 - P2 (L12P) Polymer: 41 Type: protein Length: 113 Chains: v, w Organism Triticum aestivum UniProtKB:   Protein Feature View | Search PDB | Q7X729     Molecule: 60S ribosomal protein L35 (L29p) Polymer: 42 Type: protein Length: 124 Chains: c Organism Triticum aestivum Gene Name RPL35 UniProtKB:   Protein Feature View | Search PDB | Q8L805     Molecule: 60S ribosomal protein L7 (L30p) Polymer: 43 Type: protein Length: 244 Chains: e Organism Triticum aestivum UniProtKB:   Protein Feature View | Search PDB | Q5I7K6     Molecule: 60S acidic ribosomal protein P0 (L10p) Polymer: 44 Type: protein Length: 319 Chains: s Organism Triticum aestivum Gene Names Os08g0130500 LOC_Os08g03640 P0582D05.130-1 UniProtKB:   Protein Feature View | Search PDB | P41095     Molecule: 60S ribosomal protein L3 (L3p) Polymer: 45 Type: protein Length: 389 Chains: C Organism Triticum aestivum Gene Names RPL3 RPL3-A1 RPL3A-1 UniProtKB:   Protein Feature View | Search PDB | Q7X744     Molecule: 60S ribosomal protein L4 (L4p) Polymer: 46 Type: protein Length: 405 Chains: D Organism Triticum aestivum Gene Names OJ1014_E09.28 OsJ_23326 UniProtKB:   Protein Feature View | Search PDB | Q6ZLB8     Molecule: 60S ribosomal protein L13a (L13p) Polymer: 47 Type: protein Length: 206 Chains: K Organism Triticum aestivum UniProtKB:   Protein Feature View | Search PDB | Q5I7L1     Molecule: 60S ribosomal protein L43 (L37ae) Polymer: 48 Type: protein Length: 92 Chains: m Organism Triticum aestivum Gene Name TAA_ctg0616b.00240.1 UniProtKB:   Protein Feature View | Search PDB | D8L9P6     Molecule: 60S ribosomal protein L10 (L10e) Polymer: 49 Type: protein Length: 224 Chains: I Organism Triticum aestivum UniProtKB:   Protein Feature View | Search PDB | Q7X9L9         Source Hide Polymer: 1 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 2 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 3 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 4 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 5 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 6 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 7 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 8 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 9 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 10 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 11 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 12 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 13 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 14 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 15 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 16 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 17 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 18 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 19 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 20 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 21 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 22 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 23 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 24 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 25 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 26 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 27 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 28 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 29 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 30 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 31 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 32 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 33 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 34 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 35 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 36 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 37 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 38 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 39 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 40 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 41 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 42 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 43 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 44 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 45 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 46 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 47 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 48 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat   Polymer: 49 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Wheat       Modified Residues Hide Identifier Formula Parent Type UNK Search  C4 H9 N O2 lPeptideLinking     External Domain Annotations Hide Pfam Classification: 57 Domains - data from Pfam   GO Terms: 250 Terms - data from GO      Structural Biology Knowledgebase Data Hide   Electron Microscopy Database Hide EMDataBank  :  1780     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Composite of PDB entries 3IZR, 3IZ6, 3IZ7, 3IZ9 with symmetry transformations applied         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Armache, J.-P.,  Jarasch, A.,  Anger, A.M.,  Villa, E.,  Becker, T.,  Bhushan, S.,  Jossinet, F.,  Habeck, M.,  Dindar, G.,  Franckenberg, S.,  Marquez, V.,  Mielke. T., Thomm,  M.,  Berninghausen, O.,  Beatrix, B.,  Soeding, J.,  Westhof, E.,  Wilson, D.N.,  Beckmann, R. Deposition:   2010-12-06 Release:   2010-12-15 Last Modified (REVDAT):   2011-07-27 Previous versions:  3IZ5     Revision History    Hide Mouse over text for details 2011-07-27 Version format compliance 2011-07-27 Sequence database correspondence 2011-07-13 Version format compliance     Experimental Details Hide Method:   ELECTRON MICROSCOPY Exp. Data: EM Resolution [Å]: 5.5 Aggregation State: PARTICLE Symmetry Type: ASYMMETRIC Reconstruction Method: SINGLE PARTICLE Specimen Type: VITREOUS ICE (CRYO EM)     Molecule of the Month Hide Ribosomal Subunits Ribosome Ricin