POP-OUT | CLOSE
Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus, reduced, 2 mol/ASU, with bound NADH
3IAM
Primary Citation
 
 
  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Molecular Description Hide
    Classification: Oxidoreductase
    Structure Weight: 570520.24
    Molecule: NADH-quinone oxidoreductase subunit 1
    Polymer: 1 Type: protein Length: 438
    Chains: 1, A
    EC#: 1.6.99.5   
    Organism Thermus thermophilus HB8
    Gene Names nqo1 TTHA0089
    UniProtKB:   Protein Feature View | Search PDB | Q56222  
    Molecule: NADH-quinone oxidoreductase subunit 2
    Polymer: 2 Type: protein Length: 181
    Chains: 2, B
    EC#: 1.6.99.5   
    Organism Thermus thermophilus HB8
    Gene Names nqo2 TTHA0088
    UniProtKB:   Protein Feature View | Search PDB | Q56221  
    Molecule: NADH-quinone oxidoreductase subunit 3
    Polymer: 3 Type: protein Length: 783
    Chains: 3, C
    EC#: 1.6.99.5   
    Organism Thermus thermophilus HB8
    Gene Names nqo3 TTHA0090
    UniProtKB:   Protein Feature View | Search PDB | Q56223  
    Molecule: NADH-quinone oxidoreductase subunit 4
    Polymer: 4 Type: protein Length: 409
    Chains: 4, D
    EC#: 1.6.99.5   
    Organism Thermus thermophilus HB8
    Gene Names nqo4 TTHA0087
    UniProtKB:   Protein Feature View | Search PDB | Q56220  
    Molecule: NADH-quinone oxidoreductase subunit 5
    Polymer: 5 Type: protein Length: 207
    Chains: 5, E
    EC#: 1.6.99.5   
    Organism Thermus thermophilus HB8
    Gene Names nqo5 TTHA0086
    UniProtKB:   Protein Feature View | Search PDB | Q56219  
    Molecule: NADH-quinone oxidoreductase subunit 6
    Polymer: 6 Type: protein Length: 181
    Chains: 6, F
    EC#: 1.6.99.5   
    Organism Thermus thermophilus HB8
    Gene Names nqo6 TTHA0085
    UniProtKB:   Protein Feature View | Search PDB | Q56218  
    Molecule: NADH-quinone oxidoreductase subunit 9
    Polymer: 7 Type: protein Length: 182
    Chains: 9, G
    EC#: 1.6.99.5   
    Organism Thermus thermophilus HB8
    Gene Names nqo9 TTHA0092
    UniProtKB:   Protein Feature View | Search PDB | Q56224  
    Molecule: NADH-quinone oxidoreductase subunit 15
    Polymer: 8 Type: protein Length: 129
    Chains: 7, H
    EC#: 1.6.99.5   
    Organism Thermus thermophilus HB8
    Gene Names nqo15 TTHA0496
    UniProtKB:   Protein Feature View | Search PDB | Q5SKZ7  
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 2
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 3
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 4
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 5
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 6
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 7
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 8
    Scientific Name: Thermus thermophilus   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    2FUG  Original crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus, oxidized, 4 mol/ASU 
    3I9V  Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus, oxidized, 2 mol/ASU 
    3IAS  Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus, oxidized, 4 mol/ASU, re-refined to 3.15 angstrom resolution 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name Interactions
    CA
    Search 
    Download      		CA Ca
    CALCIUM ION
    FES
    Search 
    Download      		FES Fe2 S2
    FE2/S2 (INORGANIC) CLUSTER
    FMN
    Search 
    Download      		FMN C17 H21 N4 O9 P
    FLAVIN MONONUCLEOTIDE
    MG
    Search 
    Download      		MG Mg
    MAGNESIUM ION
    NAI
    Search 
    Download      		NAI C21 H29 N7 O14 P2
    1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
    SF4
    Search 
    Download      		SF4 Fe4 S4
    IRON/SULFUR CLUSTER
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
Reset Layout
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Sazanov, L.A.,  Berrisford, J.M.

    Deposition:   2009-07-14
    Release:   2009-09-15
    Last Modified (REVDAT):   2011-07-13
     
  •   Revision History    Hide
    Mouse over text for details
    2011-07-13
    Source and taxonomy
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   3.10
    R-Value: 0.232 (obs.)
    R-Free: 0.262
    Space Group: P 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 109.00 α = 90.00 
    b = 151.01 β = 93.07 
    c = 216.62 γ = 90.00