Elongation complex of the 70S ribosome with three tRNAs and mRNA. This entry 3I8I contains 50S ribosomal subnit. The 30S ribosomal subunit can be found in PDB entry 3I8H. Molecule A in the same asymmetric unit is deposited as 3I8F (50S) and 3I8G (30S). DOI:10.2210/pdb3i8i/pdb   NDB ID: NA0111

3I8I   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Split Entry The asymmetric unit for this structure is composed of multiple PDB entries: 3I8F   3I8G   3I8H   3I8I     Download All Files      Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Ribosome Structure Weight: 1440331.89 Molecule: 23S RRNA Polymer: 1 Type: rna Length: 2912 Chains: A Organism Thermus thermophilus Molecule: 5S RRNA Polymer: 2 Type: rna Length: 122 Chains: B Organism Thermus thermophilus Molecule: 50S RIBOSOMAL PROTEIN L2 Polymer: 3 Type: protein Length: 276 Chains: D Organism Thermus thermophilus Gene Names rplB TTHA1689 UniProtKB:   Protein Feature View | Search PDB | P60405     Molecule: 50S RIBOSOMAL PROTEIN L3 Polymer: 4 Type: protein Length: 206 Chains: E Organism Thermus thermophilus Gene Names rplC TTHA1692 UniProtKB:   Protein Feature View | Search PDB | Q5SHN8     Molecule: 50S RIBOSOMAL PROTEIN L4 Polymer: 5 Type: protein Length: 210 Chains: F Organism Thermus thermophilus Gene Names rplD TTHA1691 UniProtKB:   Protein Feature View | Search PDB | Q5SHN9     Molecule: 50S RIBOSOMAL PROTEIN L5 Polymer: 6 Type: protein Length: 182 Chains: G Organism Thermus thermophilus Gene Names rplE TTHA1680 UniProtKB:   Protein Feature View | Search PDB | Q5SHQ0     Molecule: 50S RIBOSOMAL PROTEIN L6 Polymer: 7 Type: protein Length: 180 Chains: H Organism Thermus thermophilus Gene Names rplF TTHA1677 UniProtKB:   Protein Feature View | Search PDB | Q5SHQ3     Molecule: 50S ribosomal protein L7/L12 Polymer: 8 Type: protein Length: 125 Chains: I, J Organism Thermus thermophilus Gene Names rplL TTHA0210 UniProtKB:   Protein Feature View | Search PDB | Q8VVE2     Molecule: 50S RIBOSOMAL PROTEIN L9 Polymer: 9 Type: protein Length: 148 Chains: K Organism Thermus thermophilus Gene Names rplI TTHA0242 UniProtKB:   Protein Feature View | Search PDB | Q5SLQ1     Molecule: 50S ribosomal protein L10 Polymer: 10 Type: protein Length: 173 Chains: Y Organism Thermus thermophilus Gene Names rplJ TTHA0209 UniProtKB:   Protein Feature View | Search PDB | Q8VVE3     Molecule: 50S ribosomal protein L11 Polymer: 11 Type: protein Length: 147 Chains: L Organism Thermus thermophilus Gene Names rplK TTHA0247 UniProtKB:   Protein Feature View | Search PDB | Q5SLP6     Molecule: 50S RIBOSOMAL PROTEIN L13 Polymer: 12 Type: protein Length: 140 Chains: M Organism Thermus thermophilus Gene Names rplM TTHA1465 UniProtKB:   Protein Feature View | Search PDB | P60488     Molecule: 50S RIBOSOMAL PROTEIN L14 Polymer: 13 Type: protein Length: 122 Chains: N Organism Thermus thermophilus Gene Names rplN TTHA1682 UniProtKB:   Protein Feature View | Search PDB | Q5SHP8     Molecule: 50S RIBOSOMAL PROTEIN L15 Polymer: 14 Type: protein Length: 150 Chains: O Organism Thermus thermophilus Gene Names rplO TTHA1673 UniProtKB:   Protein Feature View | Search PDB | Q5SHQ7     Molecule: 50S RIBOSOMAL PROTEIN L16 Polymer: 15 Type: protein Length: 141 Chains: P Organism Thermus thermophilus Gene Names rplP TTHA1685 UniProtKB:   Protein Feature View | Search PDB | P60489     Molecule: 50S RIBOSOMAL PROTEIN L17 Polymer: 16 Type: protein Length: 118 Chains: 0 Organism Thermus thermophilus Gene Names rplQ rpl17 TTHA1663 UniProtKB:   Protein Feature View | Search PDB | Q9Z9H5     Molecule: 50S RIBOSOMAL PROTEIN L18 Polymer: 17 Type: protein Length: 112 Chains: Q Organism Thermus thermophilus Gene Names rplR TTHA1676 UniProtKB:   Protein Feature View | Search PDB | Q5SHQ4     Molecule: 50S RIBOSOMAL PROTEIN L19 Polymer: 18 Type: protein Length: 146 Chains: R Organism Thermus thermophilus Gene Names rplS TTHA1031 UniProtKB:   Protein Feature View | Search PDB | P60490     Molecule: 50S RIBOSOMAL PROTEIN L20 Polymer: 19 Type: protein Length: 118 Chains: 1 Organism Thermus thermophilus Gene Names rplT TTHA0553 UniProtKB:   Protein Feature View | Search PDB | P60491     Molecule: 50S RIBOSOMAL PROTEIN L21 Polymer: 20 Type: protein Length: 101 Chains: 2 Organism Thermus thermophilus Gene Names rplU TTHA1783 UniProtKB:   Protein Feature View | Search PDB | P60492     Molecule: 50S RIBOSOMAL PROTEIN L22 Polymer: 21 Type: protein Length: 113 Chains: S Organism Thermus thermophilus Gene Names rplV TTHA1687 UniProtKB:   Protein Feature View | Search PDB | Q5SHP3     Molecule: 50S RIBOSOMAL PROTEIN L23 Polymer: 22 Type: protein Length: 96 Chains: T Organism Thermus thermophilus Gene Names rplW TTHA1690 UniProtKB:   Protein Feature View | Search PDB | Q5SHP0     Molecule: 50S RIBOSOMAL PROTEIN L24 Polymer: 23 Type: protein Length: 110 Chains: U Organism Thermus thermophilus Gene Names rplX TTHA1681 UniProtKB:   Protein Feature View | Search PDB | Q5SHP9     Molecule: 50S RIBOSOMAL PROTEIN L25 Polymer: 24 Type: protein Length: 206 Chains: V Organism Thermus thermophilus Gene Names rplY rpl25 rptL5 TTHA1589 UniProtKB:   Protein Feature View | Search PDB | Q5SHZ1     Molecule: 50S RIBOSOMAL PROTEIN L27 Polymer: 25 Type: protein Length: 85 Chains: 3 Organism Thermus thermophilus Gene Names rpmA TTHA1782 UniProtKB:   Protein Feature View | Search PDB | P60493     Molecule: 50S RIBOSOMAL PROTEIN L28 Polymer: 26 Type: protein Length: 98 Chains: Z Organism Thermus thermophilus Gene Names rpmB TTHA0042 UniProtKB:   Protein Feature View | Search PDB | P60494     Molecule: 50S RIBOSOMAL PROTEIN L29 Polymer: 27 Type: protein Length: 72 Chains: W Organism Thermus thermophilus Gene Names rpmC TTHA1684 UniProtKB:   Protein Feature View | Search PDB | Q5SHP6     Molecule: 50S RIBOSOMAL PROTEIN L30 Polymer: 28 Type: protein Length: 60 Chains: X Organism Thermus thermophilus Gene Names rpmD TTHA1674 UniProtKB:   Protein Feature View | Search PDB | Q5SHQ6     Molecule: 50S ribosomal protein L31 Polymer: 29 Type: protein Length: 71 Chains: 4 Organism Thermus thermophilus Gene Names rpmE TTHA1073 UniProtKB:   Protein Feature View | Search PDB | Q5SJE1     Molecule: 50S RIBOSOMAL PROTEIN L32 Polymer: 30 Type: protein Length: 60 Chains: 5 Organism Thermus thermophilus Gene Names rpmF rpl32 TTHA0418 UniProtKB:   Protein Feature View | Search PDB | P80339     Molecule: 50S RIBOSOMAL PROTEIN L33 Polymer: 31 Type: protein Length: 54 Chains: 6 Organism Thermus thermophilus Gene Names rpmG rpl33 TTHA0250 UniProtKB:   Protein Feature View | Search PDB | P35871     Molecule: 50S RIBOSOMAL PROTEIN L34 Polymer: 32 Type: protein Length: 49 Chains: 7 Organism Thermus thermophilus Gene Names rpmH rpl34 TTHA0446 UniProtKB:   Protein Feature View | Search PDB | P80340     Molecule: 50S RIBOSOMAL PROTEIN L35 Polymer: 33 Type: protein Length: 65 Chains: 8 Organism Thermus thermophilus Gene Names rpmI TTHA0552 UniProtKB:   Protein Feature View | Search PDB | Q5SKU1         Source Hide Polymer: 1 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 2 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 3 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 4 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 5 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 6 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 7 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 8 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 9 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 10 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 11 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 12 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 13 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 14 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 15 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 16 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 17 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 18 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 19 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 20 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 21 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 22 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 23 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 24 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 25 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 26 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 27 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 28 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 29 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 30 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 31 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 32 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 33 Scientific Name: Thermus thermophilus   Taxonomy         Related PDB Entries Hide Identifier Details 3I8F  50S subunit in molecule B  3I8G  30S subunit in molecule B  3I8H  30S subunit      External Domain Annotations Hide CATH Classification v3.4.0: 10 Domains - data from CATH   Pfam Classification: 35 Domains - data from Pfam   GO Terms: 201 Terms - data from GO      Structural Biology Knowledgebase Data Hide   Nucleic Acid Database Hide View the NDB ID associated with this structure: NA0111     Data in orange boxes are gathered from external resources (when available). 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Biological Assembly            View in 3D More Images... Composite of PDB entries (3I8F and 3I8G)         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Jenner, L.B.,  Yusupova, G.,  Yusupov, M. Deposition:   2009-07-09 Release:   2010-04-21 Last Modified (REVDAT):   2010-06-02     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors Resolution[Å]:   3.10 R-Value: 0.215 (work) R-Free: 0.255 Space Group: P 21 21 21 Unit Cell:   Length [Å] Angles [°] a = 209.46 α = 90.00  b = 446.20 β = 90.00  c = 623.05 γ = 90.00      Molecule of the Month Hide Ribosome Transfer-Messenger RNA