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Elongation complex of the 70S ribosome with three tRNAs and mRNA. This entry 3I8I contains 50S ribosomal subnit. The 30S ribosomal subunit can be found in PDB entry 3I8H. Molecule A in the same asymmetric unit is deposited as 3I8F (50S) and 3I8G (30S).
DOI:10.2210/pdb3i8i/pdb   NDB ID: NA0111
3I8I
Split Entry
The asymmetric unit for this structure is composed of multiple PDB entries:
3I8F   3I8G   3I8H   3I8I  
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The complete entry has been assigned PDB ID 4V6F and is available for download in PDBx/mmCIF and PDBML/XML formats from the FTP archive at:
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/mmCIF/4v6f.cif.gz
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/XML/4v6f.xml.gz
 
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ribosome
    Structure Weight: 1440331.89
    Molecule: 23S RRNA
    Polymer: 1 Type: rna Length: 2912
    Chains: A
    Organism: Thermus thermophilus
    Molecule: 5S RRNA
    Polymer: 2 Type: rna Length: 122
    Chains: B
    Organism: Thermus thermophilus
    Molecule: 50S RIBOSOMAL PROTEIN L2
    Polymer: 3 Type: protein Length: 276
    Chains: D
    Organism: Thermus thermophilus
    Gene Names: rplB TTHA1689
    UniProtKB: Protein Feature View | Search PDB | P60405  
    Molecule: 50S RIBOSOMAL PROTEIN L3
    Polymer: 4 Type: protein Length: 206
    Chains: E
    Organism: Thermus thermophilus
    Gene Names: rplC TTHA1692
    UniProtKB: Protein Feature View | Search PDB | Q5SHN8  
    Molecule: 50S RIBOSOMAL PROTEIN L4
    Polymer: 5 Type: protein Length: 210
    Chains: F
    Organism: Thermus thermophilus
    Gene Names: rplD TTHA1691
    UniProtKB: Protein Feature View | Search PDB | Q5SHN9  
    Molecule: 50S RIBOSOMAL PROTEIN L5
    Polymer: 6 Type: protein Length: 182
    Chains: G
    Organism: Thermus thermophilus
    Gene Names: rplE TTHA1680
    UniProtKB: Protein Feature View | Search PDB | Q5SHQ0  
    Molecule: 50S RIBOSOMAL PROTEIN L6
    Polymer: 7 Type: protein Length: 180
    Chains: H
    Organism: Thermus thermophilus
    Gene Names: rplF TTHA1677
    UniProtKB: Protein Feature View | Search PDB | Q5SHQ3  
    Molecule: 50S ribosomal protein L7/L12
    Polymer: 8 Type: protein Length: 125
    Chains: I, J
    Organism: Thermus thermophilus
    Gene Names: rplL TTHA0210
    UniProtKB: Protein Feature View | Search PDB | Q8VVE2  
    Molecule: 50S RIBOSOMAL PROTEIN L9
    Polymer: 9 Type: protein Length: 148
    Chains: K
    Organism: Thermus thermophilus
    Gene Names: rplI TTHA0242
    UniProtKB: Protein Feature View | Search PDB | Q5SLQ1  
    Molecule: 50S ribosomal protein L10
    Polymer: 10 Type: protein Length: 173
    Chains: Y
    Organism: Thermus thermophilus
    Gene Names: rplJ TTHA0209
    UniProtKB: Protein Feature View | Search PDB | Q8VVE3  
    Molecule: 50S ribosomal protein L11
    Polymer: 11 Type: protein Length: 147
    Chains: L
    Organism: Thermus thermophilus
    Gene Names: rplK TTHA0247
    UniProtKB: Protein Feature View | Search PDB | Q5SLP6  
    Molecule: 50S RIBOSOMAL PROTEIN L13
    Polymer: 12 Type: protein Length: 140
    Chains: M
    Organism: Thermus thermophilus
    Gene Names: rplM TTHA1465
    UniProtKB: Protein Feature View | Search PDB | P60488  
    Molecule: 50S RIBOSOMAL PROTEIN L14
    Polymer: 13 Type: protein Length: 122
    Chains: N
    Organism: Thermus thermophilus
    Gene Names: rplN TTHA1682
    UniProtKB: Protein Feature View | Search PDB | Q5SHP8  
    Molecule: 50S RIBOSOMAL PROTEIN L15
    Polymer: 14 Type: protein Length: 150
    Chains: O
    Organism: Thermus thermophilus
    Gene Names: rplO TTHA1673
    UniProtKB: Protein Feature View | Search PDB | Q5SHQ7  
    Molecule: 50S RIBOSOMAL PROTEIN L16
    Polymer: 15 Type: protein Length: 141
    Chains: P
    Organism: Thermus thermophilus
    Gene Names: rplP TTHA1685
    UniProtKB: Protein Feature View | Search PDB | P60489  
    Molecule: 50S RIBOSOMAL PROTEIN L17
    Polymer: 16 Type: protein Length: 118
    Chains: 0
    Organism: Thermus thermophilus
    Gene Names: rplQ rpl17 TTHA1663
    UniProtKB: Protein Feature View | Search PDB | Q9Z9H5  
    Molecule: 50S RIBOSOMAL PROTEIN L18
    Polymer: 17 Type: protein Length: 112
    Chains: Q
    Organism: Thermus thermophilus
    Gene Names: rplR TTHA1676
    UniProtKB: Protein Feature View | Search PDB | Q5SHQ4  
    Molecule: 50S RIBOSOMAL PROTEIN L19
    Polymer: 18 Type: protein Length: 146
    Chains: R
    Organism: Thermus thermophilus
    Gene Names: rplS TTHA1031
    UniProtKB: Protein Feature View | Search PDB | P60490  
    Molecule: 50S RIBOSOMAL PROTEIN L20
    Polymer: 19 Type: protein Length: 118
    Chains: 1
    Organism: Thermus thermophilus
    Gene Names: rplT TTHA0553
    UniProtKB: Protein Feature View | Search PDB | P60491  
    Molecule: 50S RIBOSOMAL PROTEIN L21
    Polymer: 20 Type: protein Length: 101
    Chains: 2
    Organism: Thermus thermophilus
    Gene Names: rplU TTHA1783
    UniProtKB: Protein Feature View | Search PDB | P60492  
    Molecule: 50S RIBOSOMAL PROTEIN L22
    Polymer: 21 Type: protein Length: 113
    Chains: S
    Organism: Thermus thermophilus
    Gene Names: rplV TTHA1687
    UniProtKB: Protein Feature View | Search PDB | Q5SHP3  
    Molecule: 50S RIBOSOMAL PROTEIN L23
    Polymer: 22 Type: protein Length: 96
    Chains: T
    Organism: Thermus thermophilus
    Gene Names: rplW TTHA1690
    UniProtKB: Protein Feature View | Search PDB | Q5SHP0  
    Molecule: 50S RIBOSOMAL PROTEIN L24
    Polymer: 23 Type: protein Length: 110
    Chains: U
    Organism: Thermus thermophilus
    Gene Names: rplX TTHA1681
    UniProtKB: Protein Feature View | Search PDB | Q5SHP9  
    Molecule: 50S RIBOSOMAL PROTEIN L25
    Polymer: 24 Type: protein Length: 206
    Chains: V
    Organism: Thermus thermophilus
    Gene Names: rplY rpl25 rptL5 TTHA1589
    UniProtKB: Protein Feature View | Search PDB | Q5SHZ1  
    Molecule: 50S RIBOSOMAL PROTEIN L27
    Polymer: 25 Type: protein Length: 85
    Chains: 3
    Organism: Thermus thermophilus
    Gene Names: rpmA TTHA1782
    UniProtKB: Protein Feature View | Search PDB | P60493  
    Molecule: 50S RIBOSOMAL PROTEIN L28
    Polymer: 26 Type: protein Length: 98
    Chains: Z
    Organism: Thermus thermophilus
    Gene Names: rpmB TTHA0042
    UniProtKB: Protein Feature View | Search PDB | P60494  
    Molecule: 50S RIBOSOMAL PROTEIN L29
    Polymer: 27 Type: protein Length: 72
    Chains: W
    Organism: Thermus thermophilus
    Gene Names: rpmC TTHA1684
    UniProtKB: Protein Feature View | Search PDB | Q5SHP6  
    Molecule: 50S RIBOSOMAL PROTEIN L30
    Polymer: 28 Type: protein Length: 60
    Chains: X
    Organism: Thermus thermophilus
    Gene Names: rpmD TTHA1674
    UniProtKB: Protein Feature View | Search PDB | Q5SHQ6  
    Molecule: 50S ribosomal protein L31
    Polymer: 29 Type: protein Length: 71
    Chains: 4
    Organism: Thermus thermophilus
    Gene Names: rpmE TTHA1073
    UniProtKB: Protein Feature View | Search PDB | Q5SJE1  
    Molecule: 50S RIBOSOMAL PROTEIN L32
    Polymer: 30 Type: protein Length: 60
    Chains: 5
    Organism: Thermus thermophilus
    Gene Names: rpmF rpl32 TTHA0418
    UniProtKB: Protein Feature View | Search PDB | P80339  
    Molecule: 50S RIBOSOMAL PROTEIN L33
    Polymer: 31 Type: protein Length: 54
    Chains: 6
    Organism: Thermus thermophilus
    Gene Names: rpmG rpl33 TTHA0250
    UniProtKB: Protein Feature View | Search PDB | P35871  
    Molecule: 50S RIBOSOMAL PROTEIN L34
    Polymer: 32 Type: protein Length: 49
    Chains: 7
    Organism: Thermus thermophilus
    Gene Names: rpmH rpl34 TTHA0446
    UniProtKB: Protein Feature View | Search PDB | P80340  
    Molecule: 50S RIBOSOMAL PROTEIN L35
    Polymer: 33 Type: protein Length: 65
    Chains: 8
    Organism: Thermus thermophilus
    Gene Names: rpmI TTHA0552
    UniProtKB: Protein Feature View | Search PDB | Q5SKU1  
     
  •   Structure Validation Hide

    Download full validation report    

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 2
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 3
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 4
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 5
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 6
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 7
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 8
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 9
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 10
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 11
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 12
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 13
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 14
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 15
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 16
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 17
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 18
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 19
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 20
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 21
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 22
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 23
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 24
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 25
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 26
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 27
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 28
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 29
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 30
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 31
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 32
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 33
    Scientific Name: Thermus thermophilus   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    3I8F  50S subunit in molecule B 
    3I8G  30S subunit in molecule B 
    3I8H  30S subunit 
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA0111
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Composite of PDB entries (3I8F and 3I8G)