3HZ3
Lactobacillus reuteri N-terminally truncated glucansucrase GTF180(D1025N)-sucrose complex
- PDB DOI: https://doi.org/10.2210/pdb3HZ3/pdb
- Classification: TRANSFERASE
- Organism(s): Limosilactobacillus reuteri
- Expression System: Escherichia coli
- Mutation(s): Yes 
- Deposited: 2009-06-23 Released: 2010-06-30 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.22 Å
- R-Value Free: 0.243 
- R-Value Work: 0.193 
- R-Value Observed: 0.195 
wwPDB Validation   3D Report Full Report
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Glucansucrase | 1,039 | Limosilactobacillus reuteri | Mutation(s): 1  Gene Names: gtf180 EC: 2.4.1.5 | ||
UniProt | |||||
Find proteins for Q5SBN3 (Limosilactobacillus reuteri) Explore Q5SBN3  Go to UniProtKB:  Q5SBN3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q5SBN3 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CA Query on CA | D [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 2 | |||||
---|---|---|---|---|---|
ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_900003 Query on PRD_900003 | B, C | sucrose | Oligosaccharide / Nutrient |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.22 Å
- R-Value Free: 0.243 
- R-Value Work: 0.193 
- R-Value Observed: 0.195 
- Space Group: P 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 57.782 | α = 107.13 |
b = 66.233 | β = 101.37 |
c = 82.724 | γ = 85.4 |
Software Name | Purpose |
---|---|
DENZO | data reduction |
SCALEPACK | data scaling |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
HKL-2000 | data collection |
XDS | data reduction |
XDS | data scaling |
Entry History 
Deposition Data
- Released Date: 2010-06-30  Deposition Author(s): Vujicic-Zagar, A., Pijning, T., Kralj, S., Eeuwema, W., Dijkhuizen, L., Dijkstra, B.W.
Revision History (Full details and data files)
- Version 1.0: 2010-06-30
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-11-01
Changes: Refinement description - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Database references, Derived calculations, Non-polymer description, Structure summary - Version 2.1: 2024-03-20
Changes: Data collection, Database references, Structure summary