3FXP

Thermolysin inhibition

Structural Biology Knowledgebase: 3FXP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.187

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3FXP

Classification: HYDROLASE

Total Structure Weight: 35211.98

Macromolecule Entities
Molecule Chains Length Organism Details
Thermolysin A 316 Bacillus thermoproteolyticus EC#: 3.4.24.27 IUBMB
Fragment: UNP residues 233-548
Gene Name(s): npr

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
D38
Query on D38

A N~2~-[(2S)-2-{[1-(4-carboxybenzyl)-1H-1,2,3- triazol-4-yl]methyl}-3-methylbutanoyl]-L- lysine
C22 H31 N5 O5
ZFYKXBBWZOQIRM-OALUTQOASA-N
Ligand Explorer
 
JSmol
GLO
Query on GLO

A D-GLUCOSE IN LINEAR FORM
C6 H12 O6
GZCGUPFRVQAUEE-SLPGGIOYSA-N
Ligand Explorer
 
JSmol
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.187
  • Space Group: P 61 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 92.89 α = 90.00
b = 92.89 β = 90.00
c = 128.54 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-01-21
  • Released Date: 2010-02-09
  • Deposition author(s): Englert, L., Heine, A., Klebe, G.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4