Crystal structure of Staphylococcal nuclease variant Delta+PHS I72E at cryogenic temperature
3ERO
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase
    Structure Weight: 16601.87
    Molecule: Thermonuclease
    Polymer: 1 Type: protein Length: 143
    Chains: A
    EC#: 3.1.31.1   
    Mutation: G50F/V51N/I72E/P117G/H124L/S128A/Del44-49
    Organism: Staphylococcus aureus
    Gene Name: nuc
    UniProtKB: Search PDB | P00644   Protein Feature View
     
  •   Structure Validation Hide

    View the full validation report  

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Staphylococcus aureus   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    2rbm   The crystal structure of the I72K variant of Staphylococcal nuclease in delta + PHS at cryogenic temperature 
    3bdc   The crystal structure of Staphylococcal nuclease variant in delta + PHS at cryogenic temperature 
    3c1e    
    3c1f    
    3d4d    
    3d6c    
    3dmu    
    3e5s    
    3eji    
    3erq    
    3evq    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CA
    Search 
    Download 
    CA Ca
    CALCIUM ION
    THP
    Search 
    Download 
    THP C10 H16 N2 O11 P2
    THYMIDINE-3',5'-DIPHOSPHATE
    THP:3ERO
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Robinson, A.C.,  Schlessman, J.L.,  Garcia-Moreno, E.B.

    Deposition:   2008-10-02
    Release:   2008-11-04
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
    Mouse over text for details
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.85
    R-Value: 0.189 (obs.)
    R-Free: 0.226
    Space Group: P 1 21 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 31.15 α = 90.00 
    b = 60.42 β = 93.45 
    c = 38.12 γ = 90.00