Download MendeleyCrystal structure of prokaryotic domain of unknown function (DUF849) with a TIM barrel fold (YP_556190.1) from BURKHOLDERIA XENOVORANS LB400 at 1.75 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
3E49
Crystal structure of a prokaryotic domain of unknown function (duf849) with a tim barrel fold (bxe_c0966) from burkholderia xenovorans lb400 at 1.75 A resolution
- PDB DOI: https://doi.org/10.2210/pdb3E49/pdb
- Classification: METAL BINDING PROTEIN
- Organism(s): Paraburkholderia xenovorans LB400
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-08-11 Released: 2008-08-26
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.218
- R-Value Work: 0.177
- R-Value Observed: 0.179
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| uncharacterized protein DUF849 with a TIM barrel fold | 311 | Paraburkholderia xenovorans LB400 | Mutation(s): 0 Gene Names: YP_556190.1, Bxeno_C0912, Bxe_C0966 |  | |
UniProt | |||||
Find proteins for Q13GE9 (Paraburkholderia xenovorans (strain LB400)) Explore Q13GE9 Go to UniProtKB: Q13GE9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q13GE9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ETX Query on ETX | F [auth A] H [auth B] I [auth B] J [auth B] N [auth C] | 2-ETHOXYETHANOL C4 H10 O2 ZNQVEEAIQZEUHB-UHFFFAOYSA-N |  | ||
| IMD Query on IMD | L [auth B], R [auth C], T [auth D], U [auth D], V [auth D] | IMIDAZOLE C3 H5 N2 RAXXELZNTBOGNW-UHFFFAOYSA-O |  | ||
| ZN Query on ZN | E [auth A], G [auth B], M [auth C], S [auth D] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| ACT Query on ACT | K [auth B], Q [auth C] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.218
- R-Value Work: 0.177
- R-Value Observed: 0.179
- Space Group: P 1
- Diffraction Data: https://doi.org/10.18430/M33E49
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 59.495 | α = 69.99 |
| b = 68.275 | β = 88.07 |
| c = 83.952 | γ = 72.84 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PHENIX | refinement |
| SHELX | phasing |
| MolProbity | model building |
| SCALA | data scaling |
| PDB_EXTRACT | data extraction |
| MOSFLM | data reduction |
| SHELXD | phasing |
| autoSHARP | phasing |
Entry History
Deposition Data
- Released Date: 2008-08-26 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2008-08-26
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-10-25
Changes: Refinement description - Version 1.3: 2019-07-24
Changes: Data collection, Derived calculations, Refinement description - Version 1.4: 2023-02-01
Changes: Database references, Derived calculations
