3DT1

P38 Complexed with a quinazoline inhibitor

Structural Biology Knowledgebase: 3DT1 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.214

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3DT1

Classification: TRANSFERASE

Total Structure Weight: 44320.00

Macromolecule Entities
Molecule Chains Length Organism Details
Mitogen-activated protein kinase 14 A 383 Homo sapiens EC#: 2.7.11.24 IUBMB
Gene Name(s): MAPK14 Gene View CSBP CSBP1 CSBP2 CSPB1 MXI2 SAPK2A

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
P40
Query on P40

A N-cyclopropyl-4-methyl-3-{2-[(2-morpholin- 4-ylethyl)amino]quinazolin-6-yl}benzamide
N-cyclopropyl-4-methyl-3-(2-((2-(4-morpholinyl)ethyl)amino)- 6-quinazolinyl)benzamide (Synonym)
C25 H29 N5 O2
MNEXDVSJIUQQRH-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
P40 IC50: 2.4 nM (100) BindingDB

N/A in BindingMoad
IC50: 2.4 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.214
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 46.66 α = 90.00
b = 86.06 β = 90.00
c = 119.35 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-07-14
  • Released Date: 2008-10-14
  • Deposition author(s): Herberich, B., Syed, R., Li, V., Tasker, A.S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4