3CFW
L-selectin lectin and EGF domains
- PDB DOI: https://doi.org/10.2210/pdb3CFW/pdb
- Classification: CELL ADHESION
- Organism(s): Homo sapiens
- Expression System: Cricetulus griseus
- Mutation(s): No 
- Deposited: 2008-03-04 Released: 2008-03-18 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.248 
- R-Value Work: 0.201 
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
L-selectin | 164 | Homo sapiens | Mutation(s): 0  Gene Names: L-selectin, SELL | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P14151 (Homo sapiens) Explore P14151  Go to UniProtKB:  P14151 | |||||
PHAROS:  P14151 GTEx:  ENSG00000188404  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P14151 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-mannopyranose-(1-3)-[beta-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | B | 5 | N/A | ||
Glycosylation Resources | |||||
GlyTouCan:  G08748CW GlyCosmos:  G08748CW GlyGen:  G08748CW |
Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | C [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
CA Query on CA | D [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.248 
- R-Value Work: 0.201 
- Space Group: I 2 3
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 118.477 | α = 90 |
b = 118.477 | β = 90 |
c = 118.477 | γ = 90 |
Software Name | Purpose |
---|---|
HKL-2000 | data collection |
AMoRE | phasing |
CNS | refinement |
DENZO | data reduction |
SCALEPACK | data scaling |
Entry History 
Deposition Data
- Released Date: 2008-03-18  Deposition Author(s): Mehta, P., Oganesyan, V., Terzyan, S., Mather, T., McEver, R.P.
Revision History (Full details and data files)
- Version 1.0: 2008-03-18
Type: Initial release - Version 1.1: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 1.2: 2017-02-22
Changes: Database references - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Database references, Derived calculations, Structure summary - Version 2.1: 2023-08-30
Changes: Advisory, Data collection, Database references, Refinement description, Structure summary