3BWD

Crystal structure of the plant Rho protein ROP5

PDB DOI: https://doi.org/10.2210/pdb3BWD/pdb

Classification: PLANT PROTEIN
Organism(s): Arabidopsis thaliana
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2008-01-09 Released: 2008-03-11
Deposition Author(s): Thomas, C., Berken, A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.53 Å
R-Value Free: 0.265
R-Value Work: 0.247
R-Value Observed: 0.248

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This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of the plant Rho protein ROP5

Thomas, C., Berken, A.

To be published.

Macromolecule Content

Total Structure Weight: 20.28 kDa
Atom Count: 1,262
Modelled Residue Count: 156
Deposited Residue Count: 182
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Rac-like GTP-binding protein ARAC6	A [auth D]	182	Arabidopsis thaliana	Mutation(s): 0 Gene Names: ARAC6, RAC2, ROP5
UniProt
Find proteins for Q9SBJ6 (Arabidopsis thaliana) Explore Q9SBJ6 Go to UniProtKB: Q9SBJ6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9SBJ6
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GDP Query on GDP Download Ideal Coordinates CCD File SDF format, chain C [auth D] MOL2 format, chain C [auth D]	C [auth D]	GUANOSINE-5'-DIPHOSPHATE C₁₀ H₁₅ N₅ O₁₁ P₂ QGWNDRXFNXRZMB-UUOKFMHZSA-N		Interactions Focus chain C [auth D] Interactions & Density Focus chain C [auth D]
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain B [auth D] MOL2 format, chain B [auth D]	B [auth D]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain B [auth D] Interactions & Density Focus chain B [auth D]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.53 Å
R-Value Free: 0.265
R-Value Work: 0.247
R-Value Observed: 0.248
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 36.42	α = 90
b = 40.39	β = 102.6
c = 57.18	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement

Structure Validation

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Entry History

Deposition Data

Released Date: 2008-03-11

Deposition Author(s):

Thomas, C.

Berken, A.

Revision History (Full details and data files)

Version 1.0: 2008-03-11
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2023-08-30
Changes: Data collection, Database references, Derived calculations, Refinement description

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3BWD

Crystal structure of the plant Rho protein ROP5

Crystal structure of the plant Rho protein ROP5

Entity ID: 1

UniProt

Entity Groups

Sequence Annotations

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Experimental Data

Structure Validation

Ligand Structure Quality Assessment

Deposition Data

Revision History (Full details and data files)