3B5J

Crystal Structures of the S504A Mutant of an Isolated ABC-ATPase in Complex with TNP-ADP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.204

Literature

Macromolecules
Sequence Display for 3B5J

Classification: TRANSPORT PROTEIN

Total Structure Weight: 27822.55

Macromolecule Entities
Molecule Chains Length Organism Details
Alpha-hemolysin translocation ATP-binding protein hlyB A 243 Escherichia coli Fragment: ABC transporter, Residues UNP 467-707
Mutation: S504A
Gene Name(s): hlyB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
12D
Query on 12D

A 2',3'-O-[(1R,6R)-2,4,6-trinitrocyclohexa- 2,4-diene-1,1-diyl]adenosine 5'-(trihydrogen diphosphate)
C16 H16 N8 O16 P2
WYOHYTDXVJMKHS-BENPRDFYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
12D N/A in BindingDB
Kd: 1200 nM  BindingMOAD
Kd: 2100 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.204
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 179.20 α = 90.00
b = 34.60 β = 98.40
c = 38.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-10-26
  • Released Date: 2008-01-15
  • Deposition author(s): Oswald, C., Jenewein, S., Smits, S.H.J., Holland, I.B., Schmitt, L.

Revision History

  • Version 1_0: 2008-01-15

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Advisory, Version format compliance