3B38

Structure of A104V DJ-1

Structural Biology Knowledgebase: 3B38 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.181

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3B38

Classification: CHAPERONE

Total Structure Weight: 20662.00

Macromolecule Entities
Molecule Chains Length Organism Details
Protein DJ-1 A 192 Homo sapiens EC#: 3.1.2 IUBMB 3.5.1 IUBMB
Mutation: A104V
Gene Name(s): PARK7 Gene View

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.181
  • Space Group: P 65 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 66.84 α = 90.00
b = 66.84 β = 90.00
c = 175.85 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-10-19
  • Released Date: 2008-01-15
  • Deposition author(s): Lakshminarasimhan, M., Maldonado, M.T., Zhou, W., Fink, A.L., Wilson, M.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4