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Structure of rice Rubisco in complex with NADP(H)
3AXK
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Lyase
    Structure Weight: 137833.84
    Molecule: Ribulose bisphosphate carboxylase large chain
    Polymer: 1 Type: protein Length: 477
    Chains: A, B
    EC#: 4.1.1.39   
    Organism: Oryza sativa Japonica Group
    Gene Names: rbcL LOC_Osp1g00420 Nip064
    UniProtKB: Protein Feature View | Search PDB | P0C512  
    Molecule: Ribulose bisphosphate carboxylase small chain, chloroplastic
    Polymer: 2 Type: protein Length: 129
    Chains: S, T
    EC#: 4.1.1.39   
    Organism: Oryza sativa Japonica Group
    Gene Names: RBCS RBCS-C Os12g0274700 LOC_Os12g17600 OsJ_016909
    UniProtKB: Protein Feature View | Search PDB | Q0INY7  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Oryza sativa japonica group   Taxonomy   Common Name: Japanese rice  
    Polymer: 2
    Scientific Name: Oryza sativa japonica group   Taxonomy   Common Name: Japanese rice  
     
  •   Related PDB Entries Hide
    Identifier Details
    1WDD  Structure of rice Rubisco in complex with CABP 
    3AXM  Structure of rice Rubisco in complex with 6PG 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    GOL
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    GOL C3 H8 O3
    GLYCEROL
    MG
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    MG Mg
    MAGNESIUM ION
    NDP
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    NDP C21 H30 N7 O17 P3
    NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
    NDP:3AXK
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    NDP
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    NDP
    N/Ain BindingDB
    Ki: 70000 nM - data from BindingMOAD  
    N/Ain PDBbind
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    KCX
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    KCX C7 H14 N2 O4 LYS lPeptideLinking
    NME
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    NME C H5 N nonPolymer
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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