Calcium pump crystal structure with bound TNP-AMP and TG DOI:10.2210/pdb3ar5/pdb

3AR5   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Hydrolase/hydrolase Inhibitor Structure Weight: 113063.21 Molecule: Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 Polymer: 1 Type: protein Length: 995 Chains: A EC#: 3.6.3.8    Organism Oryctolagus cuniculus Gene Name ATP2A1 UniProtKB:   Protein Feature View | Search PDB | P04191         Source Hide Polymer: 1 Scientific Name: Oryctolagus cuniculus   Taxonomy   Common Name: Rabbits       Related PDB Entries Hide Identifier Details 2AGV  The same protein with bound TG and BHQ in the absence of calcium  2DQS  The same protein with bound AMPPCP in the absence of calcium  2ZBD  The same protein with bound calcium, ADP and AlF4  3AR2    3AR3    3AR4    3AR6    3AR7    3AR8    3AR9        Ligand Chemical Component Hide Identifier Formula Name Interactions NA Search  Download  Na SODIUM ION   Ligand Explorer PTY Search  Download  C40 H80 N O8 P PHOSPHATIDYLETHANOLAMINE   Ligand Explorer TG1 Search  Download  C34 H50 O12 OCTANOIC ACID [3S-[3ALPHA, 3ABETA, 4ALPHA, 6BETA, 6ABETA, 7BETA, 8ALPHA(Z), 9BALPHA]]- 6-(ACETYLOXY)-2,3,-3A,4,5,6,6A,7,8,9B-DECAHYDRO- 3,3A-DIHYDROXY-3,6,9-TRIMETHYL-8-[(2-METHYL- 1-OXO-2-BUTENYL)OXY]-2-OXO-4-(1-OXOBUTOXY)- AZULENO[4,5-B]FURAN-7-YL ESTER   Ligand Explorer TM1 Search  Download  C16 H15 N8 O13 P 2',3'-O-[(1r)-2,4,6-trinitrocyclohexa-2,5- diene-1,1-diyl]adenosine 5'-(dihydrogen phosphate)   Ligand Explorer     External Ligand Annotations Hide Identifier   Binding Affinity (Sequence Identity %) TG1 Search  Download  IC50: 0.2 nM (100) - data from BindingDB   N/A in BindingMoad N/A in PDBbind TM1 Search  Download  N/A in BindingDB Kd: 7.62 nM - data from BindingMOAD   N/A in PDBbind     Modified Residues Hide Identifier Formula Parent Type ACE Search  C2 H4 O nonPolymer     External Domain Annotations Hide Pfam Classification: 7 Domains - data from Pfam   GO Terms: 16 Terms - data from GO      Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Toyoshima, C.,  Yonekura, S.,  Tsueda, J.,  Iwasawa, S. Deposition:   2010-11-24 Release:   2011-02-02     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   2.20 R-Value: 0.262 (obs.) R-Free: 0.288 Space Group: P 41 21 2 Unit Cell:   Length [Å] Angles [°] a = 71.68 α = 90.00  b = 71.68 β = 90.00  c = 589.08 γ = 90.00      Molecule of the Month Hide Sodium-Potassium Pump Calcium Pump