Crystal structure of MvNei1/THF complex
DOI:10.2210/pdb3a46/pdb   NDB ID: NA0056
Primary Citation
  •   Molecular Description Hide
    Classification: Hydrolase
    Structure Weight: 83189.98
    Molecule: Formamidopyrimidine-DNA glycosylase
    Polymer: 1 Type: protein Length: 289
    Chains: A, B
    Organism: Acanthamoeba polyphaga mimivirus
    Gene Name: MIMI_L315
    UniProtKB: Search PDB | Q5UQ00   Protein Feature View
    Molecule: DNA
    Polymer: 2 Type: dna Length: 13
    Chains: C, E
    Molecule: DNA
    Polymer: 3 Type: dna Length: 13
    Chains: D, F
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot

  •   Related Citations in PDB Entry (REMARK 1) Hide
  •   Source Hide
    Polymer: 1
    Scientific Name: Acanthamoeba polyphaga mimivirus   Taxonomy   Common Name: Apmv Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
  •   Related PDB Entries Hide
    Identifier Details
    3A42   MvNei1 apo form 1 
    3A45   MvNei1 apo form 2 
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    GOL C3 H8 O3
  •   Modified Residues Hide
    Identifier Formula Parent Type
    3DR C5 H11 O6 P dnaLinking
  •   External Domain Annotations Hide
  •   Structural Biology Knowledgebase Data Hide
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA0056
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Imamura, K.,  Wallace, S.,  Doublie, S.

    Deposition:   2009-07-01
    Release:   2009-07-21
    Last Modified (REVDAT):   2011-07-13
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    Non-polymer description
  •   Experimental Details Hide
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.20
    R-Value: 0.213 (work)
    R-Free: 0.261
    Space Group: P 1 21 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 39.51 α = 90.00 
    b = 121.46 β = 95.50 
    c = 80.51 γ = 90.00