RCSB Protein Data Bank - RCSB PDB - 3A13 Structure Summary

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Crystal structure of Type III Rubisco SP4 mutant complexed with 2-CABP and activated with Ca

DOI:10.2210/pdb3a13/pdb

3A13

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Primary Citation

Related Citations in PDB Entry (REMARK 1) Hide

Molecular Description

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Classification:	Lyase
Structure Weight:	502326.76

Molecule:

Ribulose bisphosphate carboxylase

Polymer:

Type:

protein

Length:

444

Chains:

A, B, C, D, E, F, G, H, I, J

EC#:

Mutation:

G326E, K327R, W328D, D329I, V330T

Organism

Thermococcus kodakarensis KOD1

Gene Names

rbcL TK2290

UniProtKB:

| | O93627

Source

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Polymer: 1

Scientific Name:

Pyrococcus kodakaraensis

Taxonomy

Common Name:

Thermococcus kodakaraensis

Expression System:

Escherichia coli

Related PDB Entries

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Identifier	Details
1GEH	The apo-form about the same enzyme
3A12

Ligand Chemical Component

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Identifier	Formula	Name	Interactions
CA Search Download	Ca	CALCIUM ION		Ligand Explorer
CAP Search Download	C₆ H₁₄ O₁₃ P₂	2-CARBOXYARABINITOL-1,5-DIPHOSPHATE		Ligand Explorer
MG Search Download	Mg	MAGNESIUM ION		Ligand Explorer

Modified Residues

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Identifier		Formula	Parent	Type
KCX Search		C₇ H₁₄ N₂ O₄	LYS	lPeptideLinking

External Domain Annotations Hide
CATH Classification v3.4.0: 20 Domains - data from CATH

Pfam Classification: 2 Domains - data from Pfam

GO Terms: 8 Terms - data from GO
Structural Biology Knowledgebase Data Hide

Data in orange boxes are gathered from external resources (when available).

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Biological Assembly 1

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Biological assembly 1 assigned by authors and generated by PISA (software)

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Deposition Summary

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Authors: Nishitani, Y., Fujihashi, M., Doi, T., Yoshida, S., Atomi, H., Imanaka, T., Miki, K.

Deposition:	2009-03-25
Release:	2010-04-07

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2011-07-13
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Experimental Details

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Method: X-RAY DIFFRACTION
Exp. Data:
Structure Factors
EDS

Unit Cell:
	Length [Å]	Angles [°]
	a = 173.68	α = 90.00
	b = 247.09	β = 90.00
	c = 144.94	γ = 90.00

Molecule of the Month Hide
Rubisco