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pVHL54-213-EloB-EloC complex (4R)-4-HYDROXY-1-[(3-METHYLISOXAZOL-5-YL)ACETYL]-N-[4-(1,3-OXAZOL-5-YL)BENZYL]-L-PROLINAMIDE bound
3ZRC
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transcription
    Structure Weight: 173494.52
    Molecule: TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2
    Polymer: 1 Type: protein Length: 118
    Chains: A, D, G, J
    Organism: Homo sapiens
    Gene Name: Gene View for TCEB2
    UniProtKB: Protein Feature View | Search PDB | Q15370  
    Molecule: TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1
    Polymer: 2 Type: protein Length: 97
    Chains: B, E, H, K
    Fragment: 17-112
    Organism: Homo sapiens
    Gene Name: Gene View for TCEB1
    UniProtKB: Protein Feature View | Search PDB | Q15369  
    Molecule: VON HIPPEL-LINDAU DISEASE TUMOR SUPPRESSOR
    Polymer: 3 Type: protein Length: 163
    Chains: C, F, I, L
    Fragment: RESIDUES 54-213
    Organism: Homo sapiens
    Gene Name: Gene View for VHL
    UniProtKB: Protein Feature View | Search PDB | P40337  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Homo sapiens   Taxonomy   Expression System: Escherichia coli  
    Polymer: 3
    Scientific Name: Homo sapiens   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1LM8  STRUCTURE OF A HIF-1A-PVHL-ELONGINB-ELONGINC COMPLEX 
    1LQB  CRYSTAL STRUCTURE OF A HYDROXYLATED HIF-1 ALPHA PEPTIDEBOUND TO THE PVHL/ELONGIN-C/ELONGIN-B COMPLEX 
    1VCB  THE VHL-ELONGINC-ELONGINB STRUCTURE 
    2C9W  CRYSTAL STRUCTURE OF SOCS-2 IN COMPLEX WITH ELONGIN- B AND ELONGIN-C AT 1.9A RESOLUTION 
    2IZV  CRYSTAL STRUCTURE OF SOCS-4 IN COMPLEX WITH ELONGIN- B AND ELONGIN-C AT 2.55A RESOLUTION 
    2XAI  CRYSTAL STRUCTURE OF ANKYRIN REPEAT AND SOCS BOX- CONTAINING PROTEIN 9 (ASB9) IN COMPLEX WITH ELONGINB AND ELONGINC 
    3ZRF  PVHL54-213-ELOB-ELOC COMPLEX_APO 
    3ZTC  PVHL54-213-ELOB-ELOC COMPLEX _ (2S,4R)-N-((1,1'- BIPHENYL)-4-YLMETHYL)-4-HYDROXY-1-(2-(3-METHYLISOXAZOL -5-YL)ACETYL)PYRROLIDINE-2-CARBOXAMIDE 
    3ZTD  PVHL54-213-ELOB-ELOC COMPLEX _ METHYL 4-(((2S,4R)- 4-HYDROXY-1-(2-(3-METHYLISOXAZOL-5-YL)ACETYL) PYRROLIDINE-2-CARBOXAMIDO)METHYL)BENZOATE 
    3ZUN  PVHL54-213-ELOB-ELOC COMPLEX_(2S,4R)-4-HYDROXY-1-( 2-(3-METHYLISOXAZOL-5-YL)ACETYL)-N-(4-NITROBENZYL) PYRROLIDINE-2-CARBOXAMIDE BOUND 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    L8B
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    L8B C21 H22 N4 O5
    (4R)-4-HYDROXY-1-[(3-METHYLISOXAZOL-5-YL)ACETYL]- N-[4-(1,3-OXAZOL-5-YL)BENZYL]-L-PROLINAMIDE
    L8B:3ZRC
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    L8B
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    L8B
    N/Ain BindingDB
    N/Ain BindingMoad
    Kd: 5400 nM - data from PDBbind  
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Van Molle, I.,  Buckley, D.L.,  Crews, C.M.,  Ciulli, A.

    Deposition:   2011-06-15
    Release:   2012-03-07
    Last Modified (REVDAT):   2012-03-28
     
  •   Revision History    Hide
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    2012-03-28
    Other
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.90
    R-Value: 0.248 (obs.)
    R-Free: 0.350
    Space Group: P 41 2 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 93.74 α = 90.00 
    b = 93.74 β = 90.00 
    c = 363.18 γ = 90.00