3ZNJ

Crystal structure of unliganded ClcF from R.opacus 1CP in crystal form 1.

Structural Biology Knowledgebase: 3ZNJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.164

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3ZNJ

Classification: LYASE

Total Structure Weight: 454691.42

Macromolecule Entities
Molecule Chains Length Organism Details
5-CHLOROMUCONOLACTONE DEHALOGENASE 1, 2, 3..., 4, 5, 6, 7, 8, 9, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, R, S, T, U, V, W, X, Y, Z, a, b, c, d, e, f1, 2, 3, 4, 5, 6, 7, 8, 9, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, R, S, T, U, V, W, X, Y, Z, a, b, c, d, e, f 94 Rhodococcus opacus EC#: 5.3.3.4 IUBMB
Gene Name(s): clcF

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

1, 2, 3, 4, 5, 6, 7, 8, 9, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, R, S, T, U, V, W, X, Y, Z, a, b, c, d, e, f 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

1, 2, 3, 4, 5, 6, 7, 8, 9, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, R, S, T, U, V, W, X, Y, Z, a, b, c, d, e, f CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.164
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 151.14 α = 90.00
b = 79.43 β = 93.41
c = 198.97 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-02-14
  • Released Date: 2013-03-06
  • Deposition author(s): Roth, C., Groening, J.A.D., Kaschabek, S.R., Schloemann, M., Straeter, N.

Revision History

  • 2013-04-24
    Type: Citation | Details: JRNL
  • 2013-03-20
    Type: Other | Details: ANISOU
  • 2013-03-20
    Type: Atom nomenclature | Details: ATOM