3ZN8

Structural Basis of Signal Sequence Surveillance and Selection by the SRP-SR Complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 12.0 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

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This is version 2.1 of the entry. See complete history


Literature

Structural Basis of Signal Sequence Surveillance and Selection by the Srp-Sr Complex

Von Loeffelholz, O.Knoops, K.Ariosa, A.Zhang, X.Karuppasamy, M.Huard, K.Schoehn, G.Berger, I.Shan, S.O.Schaffitzel, C.

(2013) Nat Struct Mol Biol 20: 604

  • DOI: https://doi.org/10.1038/nsmb.2546
  • Primary Citation of Related Structures:  
    3ZN8

  • PubMed Abstract: 

    Signal-recognition particle (SRP)-dependent targeting of translating ribosomes to membranes is a multistep quality-control process. Ribosomes that are translating weakly hydrophobic signal sequences can be rejected from the targeting reaction even after they are bound to the SRP. Here we show that the early complex, formed by Escherichia coli SRP and its receptor FtsY with ribosomes translating the incorrect cargo EspP, is unstable and rearranges inefficiently into subsequent conformational states, such that FtsY dissociation is favored over successful targeting. The N-terminal extension of EspP is responsible for these defects in the early targeting complex. The cryo-electron microscopy structure of this 'false' early complex with EspP revealed an ordered M domain of SRP protein Ffh making two ribosomal contacts, and the NG domains of Ffh and FtsY forming a distorted, flexible heterodimer. Our results provide a structural basis for SRP-mediated signal-sequence selection during recruitment of the SRP receptor.


  • Organizational Affiliation

    European Molecular Biology Laboratory, Grenoble Outstation, Grenoble, France.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
SIGNAL RECOGNITION PARTICLE PROTEIN294Escherichia coliMutation(s): 0 
EC: 3.6.5.4
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Find proteins for O07347 (Thermus aquaticus)
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UniProt GroupO07347
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
SIGNAL RECOGNITION PARTICLE RECEPTOR FTSYB [auth D]295Escherichia coliMutation(s): 0 
EC: 3.6.5.4
UniProt
Find proteins for P10121 (Escherichia coli (strain K12))
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UniProt GroupP10121
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIND [auth M]125Saccharolobus solfataricusMutation(s): 0 
EC: 3.6.5.4
UniProt
Find proteins for Q97ZE7 (Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2))
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UniProt GroupQ97ZE7
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
DIPEPTIDYL AMINOPEPTIDASE BE [auth S]14Saccharomyces cerevisiaeMutation(s): 0 
EC: 3.4.14
UniProt
Find proteins for P18962 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP18962
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Entity ID: 3
MoleculeChains LengthOrganismImage
4.5 S RNAC [auth G]88Escherichia coli
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Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
MG
Query on MG

Download Ideal Coordinates CCD File 
F [auth A]MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 12.0 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONSPIDER

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-03-06
    Type: Initial release
  • Version 1.1: 2013-04-10
    Changes: Database references
  • Version 1.2: 2013-05-01
    Changes: Database references
  • Version 1.3: 2013-05-22
    Changes: Database references
  • Version 1.4: 2014-02-26
    Changes: Other, Refinement description
  • Version 2.0: 2018-03-21
    Changes: Advisory, Atomic model, Derived calculations, Structure summary
  • Version 2.1: 2018-10-03
    Changes: Data collection