3ZMR

Bacteroides ovatus GH5 xyloglucanase in complex with a XXXG heptasaccharide

Structural Biology Knowledgebase: 3ZMR SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.43 Å
  • R-Value Free: 0.157
  • R-Value Work: 0.122

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3ZMR

Classification: HYDROLASE

Total Structure Weight: 109220.59

Macromolecule Entities
Molecule Chains Length Organism Details
CELLULASE (GLYCOSYL HYDROLASE FAMILY 5) A, B 475 Bacteroides ovatus EC#: 3.2.1.151 IUBMB
Gene Name(s): BACOVA_02653

Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BTB
Query on BTB

A 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL- PROPANE-1,3-DIOL
BIS-TRIS BUFFER (Synonym)
C8 H19 N O5
OWMVSZAMULFTJU-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GLC
Query on GLC

A ALPHA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-DVKNGEFBSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GLO
Query on GLO

B D-GLUCOSE IN LINEAR FORM
C6 H12 O6
GZCGUPFRVQAUEE-SLPGGIOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BGC
Query on BGC

A, B BETA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-VFUOTHLCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
XYS
Query on XYS

A, B XYLOPYRANOSE
C5 H10 O5
SRBFZHDQGSBBOR-LECHCGJUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.43 Å
  • R-Value Free: 0.157
  • R-Value Work: 0.122
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 46.83 α = 90.00
b = 147.24 β = 92.84
c = 84.14 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-02-12
  • Released Date: 2014-01-15
  • Deposition author(s): Larsbrink, J., Rogers, T.E., Hemsworth, G.R., McKee, L.S., Spadiut, O., Klinter, S., Pudlo, N.A., Urs, K., Kelly, A.G., Cederholm, S.N., Davies, G.J., Martens, E.C., Brumer, H.

Revision History

  • 2014-03-05
    Type: Citation | Details: JRNL
  • 2014-02-05
    Type: Citation | Details: JRNL