3ZKM

BACE2 FAB COMPLEX


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.211

Literature

Macromolecules
Sequence Display for 3ZKM

Classification: HYDROLASE / IMMUNE SYSTEM

Total Structure Weight: 179935.33

Macromolecule Entities
Molecule Chains Length Organism Details
BETA-SECRETASE 2 A, B 386 Homo sapiens EC#: 3.4.23.45 IUBMB
Fragment: EXTRACELLULAR, RESIDUES 75-460
Gene Name(s): BACE2 Gene View AEPLC ALP56 ASP21 CDA13 UNQ418/PRO852
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
FAB HEAVY CHAIN C, H 221 Homo sapiens
FAB LIGHT CHAIN D, L 218 Mus musculus

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

C, H GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DMS
Query on DMS

A, B DIMETHYL SULFOXIDE
C2 H6 O S
IAZDPXIOMUYVGZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
PCA
Query on PCA
C, H L-PEPTIDE LINKING C5 H7 N O3 GLU

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.211
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 67.94 α = 90.00
b = 161.10 β = 90.00
c = 163.23 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-01-23
  • Released Date: 2013-05-29
  • Deposition author(s): Banner, D.W., Kuglstatter, A., Benz, J., Stihle, M., Ruf, A.

Revision History

  • 2013-06-05
    Type: Database references