NMR Ensemble

3ZGP

NMR structure of the catalytic domain from E. faecium L,D- transpeptidase acylated by ertapenem

Structural Biology Knowledgebase: 3ZGP SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 1700
  • Conformers Submitted: 20
  • Selection Criteria: Total Energy

wwPDB Validation report is not available for this NMR entry.


Literature

Macromolecules
Sequence Display for 3ZGP

Classification: TRANSFERASE

Total Structure Weight: 15049.83

Macromolecule Entities
Molecule Chains Length Organism Details
ERFK/YBIS/YCFS/YNHG A 129 Enterococcus faecium EC#: 2.3.2.12 IUBMB
Fragment: CATALYTIC DOMAIN, RESIDUES 341-466
Details: ERTAPENEM ANTIBIOTIC IS COVALENTLY LINKED TO THE CYSTEINE OF THE ENZYME.
Gene Name(s): HMPREF0351_12555

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1RG
Query on 1RG

A (4R,5S)-3-({(3S,5S)-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin- 3-yl}sulfanyl)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]- 4-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid
ERTAPENEM, bound form PRE-ISOMERIZED (Synonym)
C22 H27 N3 O7 S
PGRRQYXTRXQDDJ-SKHPLXCOSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 1700
  • Conformers Submitted: 20
  • Selection Criteria: TOTAL ENERGY

Structure Validation

Validation report is not available for this NMR entry.



Entry History

Deposition Data

  • Deposited Date: 2012-12-18
  • Released Date: 2013-04-24
  • Deposition author(s): Lecoq, L., Triboulet, S., Dubee, V., Bougault, C., Hugonnet, J.E., Arthur, M., Simorre, J.P.

Revision History

  • 2014-02-12
    Type: Atom nomenclature | Details: HETATM
  • 2014-02-12
    Type: Biological assembly | Details: REMARK 350
  • 2014-02-12
    Type: Non-polymer description | Details: HETSYN, FORMUL, HETNAM, HET, REMARK 600
  • 2014-02-12
    Type: Linkage | Details: CONECT, LINK
  • 2014-02-12
    Type: Other | Details: TER, MODEL, HEADER, ENDMDL, MASTER
  • 2013-08-28
    Type: Citation | Details: JRNL