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High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome
3ZEY
Split Entry
The asymmetric unit for this structure is composed of multiple PDB entries:
3ZEQ   3ZEX   3ZEY   3ZF7  
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The complete entry has been assigned PDB ID 4V8M and is available for download in PDBx/mmCIF and PDBML/XML formats from the FTP archive at:
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/mmCIF/4v8m.cif.gz
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/XML/4v8m.xml.gz
 
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ribosome
    Structure Weight: 633749.67
    Molecule: 40S RIBOSOMAL PROTEIN S3A, PUTATIVE
    Polymer: 1 Type: protein Length: 256
    Chains: 0
    Organism: Trypanosoma brucei brucei strain 927/4 GUTat10.1
    Gene Name: Tb10.70.3360
    UniProtKB: Protein Feature View | Search PDB | Q38BK6  
    Molecule: 40S RIBOSOMAL PROTEIN S4, PUTATIVE
    Polymer: 2 Type: protein Length: 273
    Chains: 1
    Organism: Trypanosoma brucei brucei strain 927/4 GUTat10.1
    Gene Names: Tb11.02.1085 Tb11.02.1090
    UniProtKB: Protein Feature View | Search PDB | Q386F2  
    Molecule: 40S RIBOSOMAL PROTEIN S5, PUTATIVE
    Polymer: 3 Type: protein Length: 190
    Chains: 2
    Organism: Trypanosoma brucei brucei strain 927/4 GUTat10.1
    Gene Name: Tb11.02.4170
    UniProtKB: Protein Feature View | Search PDB | Q385D9  
    Molecule: 40S RIBOSOMAL PROTEIN S6
    Polymer: 4 Type: protein Length: 250
    Chains: 3
    Organism: Trypanosoma brucei brucei strain 927/4 GUTat10.1
    Gene Name: Tb10.100.0080
    UniProtKB: Protein Feature View | Search PDB | Q38CL9  
    Molecule: RIBOSOMAL PROTEIN S7, PUTATIVE
    Polymer: 5 Type: protein Length: 202
    Chains: 4
    Organism: Trypanosoma brucei brucei strain 927/4 GUTat10.1
    Gene Name: Tb09.160.2550
    UniProtKB: Protein Feature View | Search PDB | Q38FD9  
    Molecule: 40S RIBOSOMAL PROTEIN S8
    Polymer: 6 Type: protein Length: 220
    Chains: 5
    Organism: Trypanosoma brucei brucei strain 927/4 GUTat10.1
    Gene Names: Tb927.8.6150 Tb927.8.6160
    UniProtKB: Protein Feature View | Search PDB | Q57YL6  
    Molecule: 40S RIBOSOMAL PROTEIN S9, PUTATIVE
    Polymer: 7 Type: protein Length: 190
    Chains: 6
    Organism: Trypanosoma brucei brucei strain 927/4 GUTat10.1
    Gene Names: Tb10.70.1380 Tb927.8.1110
    UniProtKB: Protein Feature View | Search PDB | Q57VP3  
    Molecule: GUANINE NUCLEOTIDE-BINDING PROTEIN BETA SUBUNIT-LIKE PROTEIN
    Polymer: 8 Type: protein Length: 318
    Chains: 7
    Organism: Trypanosoma brucei brucei strain 927/4 GUTat10.1
    Gene Names: Tb11.01.3170 Tb11.01.3180
    UniProtKB: Protein Feature View | Search PDB | Q383E1  
    Molecule: RIBOSOMAL PROTEIN S29, PUTATIVE
    Polymer: 9 Type: protein Length: 57
    Chains: 8
    Organism: Trypanosoma brucei brucei strain 927/4 GUTat10.1
    UniProtKB: Protein Feature View | Search PDB | M1E1E8  
    Molecule: UBIQUITIN/RIBOSOMAL PROTEIN S27A, PUTATIVE
    Polymer: 10 Type: protein Length: 153
    Chains: 9
    Organism: Trypanosoma brucei brucei strain 927/4 GUTat10.1
    Gene Name: Tb927.7.3680
    UniProtKB: Protein Feature View | Search PDB | Q57WI3  
    Molecule: 40S RIBOSOMAL PROTEIN SA, PUTATIVE
    Polymer: 11 Type: protein Length: 277
    Chains: C
    Organism: Trypanosoma brucei brucei strain 927/4 GUTat10.1
    Gene Name: Tb11.01.2680
    UniProtKB: Protein Feature View | Search PDB | Q383I8  
    Molecule: 40S RIBOSOMAL PROTEIN S10, PUTATIVE
    Polymer: 12 Type: protein Length: 172
    Chains: D
    Organism: Trypanosoma brucei brucei strain 927/4 GUTat10.1
    Gene Name: Tb10.70.1690
    UniProtKB: Protein Feature View | Search PDB | Q38B67  
    Molecule: 40S RIBOSOMAL PROTEINS S11, PUTATIVE
    Polymer: 13 Type: protein Length: 174
    Chains: E
    Organism: Trypanosoma brucei brucei strain 927/4 GUTat10.1
    Gene Name: Tb10.70.7695
    UniProtKB: Protein Feature View | Search PDB | Q38CI4  
    Molecule: 40S RIBOSOMAL PROTEIN S12
    Polymer: 14 Type: protein Length: 144
    Chains: F
    Organism: Trypanosoma brucei brucei strain 927/4 GUTat10.1
    Gene Name: Tb11.02.1830
    UniProtKB: Protein Feature View | Search PDB | Q385Y8  
    Molecule: 40S RIBOSOMAL PROTEIN S13, PUTATIVE
    Polymer: 15 Type: protein Length: 151
    Chains: G
    Organism: Trypanosoma brucei brucei strain 927/4 GUTat10.1
    Gene Names: Tb10.61.1390 Tb927.2.5910
    UniProtKB: Protein Feature View | Search PDB | Q586C2  
    Molecule: 40S RIBOSOMAL PROTEIN S14
    Polymer: 16 Type: protein Length: 144
    Chains: H
    Organism: Trypanosoma brucei brucei strain 927/4 GUTat10.1
    Gene Names: Tb11.0290 Tb11.0390 Tb927.6.4980
    UniProtKB: Protein Feature View | Search PDB | Q4FKG9  
    Molecule: 40S RIBOSOMAL PROTEIN S15, PUTATIVE
    Polymer: 17 Type: protein Length: 152
    Chains: I
    Organism: Trypanosoma brucei brucei strain 927/4 GUTat10.1
    Gene Names: Tb927.7.2340 Tb927.7.2370
    UniProtKB: Protein Feature View | Search PDB | Q57XN7  
    Molecule: 40S RIBOSOMAL PROTEIN S15A, PUTATIVE
    Polymer: 18 Type: protein Length: 130
    Chains: J
    Organism: Trypanosoma brucei brucei strain 927/4 GUTat10.1
    Gene Names: Tb11.02.4000 Tb927.3.4360
    UniProtKB: Protein Feature View | Search PDB | Q580K6  
    Molecule: 40S RIBOSOMAL PROTEIN S16, PUTATIVE
    Polymer: 19 Type: protein Length: 149
    Chains: K
    Organism: Trypanosoma brucei brucei strain 927/4 GUTat10.1
    Gene Names: Tb927.7.1040 Tb927.7.1050
    UniProtKB: Protein Feature View | Search PDB | Q57VV0  
    Molecule: 40S RIBOSOMAL PROTEIN S17, PUTATIVE
    Polymer: 20 Type: protein Length: 142
    Chains: L
    Organism: Trypanosoma brucei brucei strain 927/4 GUTat10.1
    Gene Names: Tb11.01.3675 Tb11.01.3676
    UniProtKB: Protein Feature View | Search PDB | Q382Z8  
    Molecule: 40S RIBOSOMAL PROTEIN S18, PUTATIVE
    Polymer: 21 Type: protein Length: 153
    Chains: M
    Organism: Trypanosoma brucei brucei strain 927/4 GUTat10.1
    Gene Names: Tb10.70.1730 Tb10.70.1740
    UniProtKB: Protein Feature View | Search PDB | Q38B69  
    Molecule: RIBOSOMAL PROTEIN S19, PUTATIVE
    Polymer: 22 Type: protein Length: 167
    Chains: O
    Organism: Trypanosoma brucei brucei strain 927/4 GUTat10.1
    Gene Name: Tb927.4.1860
    UniProtKB: Protein Feature View | Search PDB | Q583K7  
    Molecule: 40S RIBOSOMAL PROTEIN S2, PUTATIVE
    Polymer: 23 Type: protein Length: 266
    Chains: P
    Organism: Trypanosoma brucei brucei strain 927/4 GUTat10.1
    Gene Names: Tb10.61.1960 Tb10.61.2070
    UniProtKB: Protein Feature View | Search PDB | Q388D3  
    Molecule: RIBOSOMAL PROTEIN S20, PUTATIVE
    Polymer: 24 Type: protein Length: 117
    Chains: Q
    Organism: Trypanosoma brucei brucei strain 927/4 GUTat10.1
    UniProtKB: Protein Feature View | Search PDB | M1E1E7  
    Molecule: 40S RIBOSOMAL PROTEIN S21, PUTATIVE
    Polymer: 25 Type: protein Length: 194
    Chains: R
    Organism: Trypanosoma brucei brucei strain 927/4 GUTat10.1
    Gene Name: Tb11.02.4360
    UniProtKB: Protein Feature View | Search PDB | Q385B8  
    Molecule: 40S RIBOSOMAL PROTEIN S23, PUTATIVE
    Polymer: 26 Type: protein Length: 143
    Chains: S
    Organism: Trypanosoma brucei brucei strain 927/4 GUTat10.1
    Gene Names: Tb10.70.7020 Tb10.70.7030
    UniProtKB: Protein Feature View | Search PDB | Q38CD1  
    Molecule: 40S RIBOSOMAL PROTEIN S24
    Polymer: 27 Type: protein Length: 137
    Chains: T
    Organism: Trypanosoma brucei brucei strain 927/4 GUTat10.1
    Gene Names: Tb10.6k15.3340 Tb10.6k15.3350
    UniProtKB: Protein Feature View | Search PDB | Q38AM9  
    Molecule: 40S RIBOSOMAL PROTEIN S25, PUTATIVE
    Polymer: 28 Type: protein Length: 113
    Chains: U
    Organism: Trypanosoma brucei brucei strain 927/4 GUTat10.1
    Gene Names: Tb10.70.4800 Tb927.3.1370
    UniProtKB: Protein Feature View | Search PDB | Q57XX0  
    Molecule: RIBOSOMAL PROTEIN S26, PUTATIVE
    Polymer: 29 Type: protein Length: 111
    Chains: V
    Organism: Trypanosoma brucei brucei strain 927/4 GUTat10.1
    Gene Name: Tb11.01.0355
    UniProtKB: Protein Feature View | Search PDB | Q384J9  
    Molecule: 40S RIBOSOMAL PROTEIN S27, PUTATIVE
    Polymer: 30 Type: protein Length: 86
    Chains: W
    Organism: Trypanosoma brucei brucei strain 927/4 GUTat10.1
    Gene Name: Tb11.01.1475
    UniProtKB: Protein Feature View | Search PDB | Q383V7  
    Molecule: 40S RIBOSOMAL PROTEIN S3, PUTATIVE
    Polymer: 31 Type: protein Length: 214
    Chains: X
    Organism: Trypanosoma brucei brucei strain 927/4 GUTat10.1
    Gene Name: Tb09.160.4450
    UniProtKB: Protein Feature View | Search PDB | Q38EW1  
    Molecule: 40S RIBOSOMAL PROTEIN S30, PUTATIVE
    Polymer: 32 Type: protein Length: 66
    Chains: Y
    Organism: Trypanosoma brucei brucei strain 927/4 GUTat10.1
    Gene Name: Tb927.6.2110
    UniProtKB: Protein Feature View | Search PDB | Q584U5  
    Molecule: 40S RIBOSOMAL PROTEIN S33, PUTATIVE
    Polymer: 33 Type: protein Length: 103
    Chains: Z
    Organism: Trypanosoma brucei brucei strain 927/4 GUTat10.1
    Gene Names: Tb927.7.230 Tb927.7.240
    UniProtKB: Protein Feature View | Search PDB | Q57U30  
     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Trypanosoma brucei brucei   Taxonomy    
    Polymer: 2
    Scientific Name: Trypanosoma brucei brucei   Taxonomy    
    Polymer: 3
    Scientific Name: Trypanosoma brucei brucei   Taxonomy    
    Polymer: 4
    Scientific Name: Trypanosoma brucei brucei   Taxonomy    
    Polymer: 5
    Scientific Name: Trypanosoma brucei brucei   Taxonomy    
    Polymer: 6
    Scientific Name: Trypanosoma brucei brucei   Taxonomy    
    Polymer: 7
    Scientific Name: Trypanosoma brucei brucei   Taxonomy    
    Polymer: 8
    Scientific Name: Trypanosoma brucei brucei   Taxonomy    
    Polymer: 9
    Scientific Name: Trypanosoma brucei brucei   Taxonomy    
    Polymer: 10
    Scientific Name: Trypanosoma brucei brucei   Taxonomy    
    Polymer: 11
    Scientific Name: Trypanosoma brucei brucei   Taxonomy    
    Polymer: 12
    Scientific Name: Trypanosoma brucei brucei   Taxonomy    
    Polymer: 13
    Scientific Name: Trypanosoma brucei brucei   Taxonomy    
    Polymer: 14
    Scientific Name: Trypanosoma brucei brucei   Taxonomy    
    Polymer: 15
    Scientific Name: Trypanosoma brucei brucei   Taxonomy    
    Polymer: 16
    Scientific Name: Trypanosoma brucei brucei   Taxonomy    
    Polymer: 17
    Scientific Name: Trypanosoma brucei brucei   Taxonomy    
    Polymer: 18
    Scientific Name: Trypanosoma brucei brucei   Taxonomy    
    Polymer: 19
    Scientific Name: Trypanosoma brucei brucei   Taxonomy    
    Polymer: 20
    Scientific Name: Trypanosoma brucei brucei   Taxonomy    
    Polymer: 21
    Scientific Name: Trypanosoma brucei brucei   Taxonomy    
    Polymer: 22
    Scientific Name: Trypanosoma brucei brucei   Taxonomy    
    Polymer: 23
    Scientific Name: Trypanosoma brucei brucei   Taxonomy    
    Polymer: 24
    Scientific Name: Trypanosoma brucei brucei   Taxonomy    
    Polymer: 25
    Scientific Name: Trypanosoma brucei brucei   Taxonomy    
    Polymer: 26
    Scientific Name: Trypanosoma brucei brucei   Taxonomy    
    Polymer: 27
    Scientific Name: Trypanosoma brucei brucei   Taxonomy    
    Polymer: 28
    Scientific Name: Trypanosoma brucei brucei   Taxonomy    
    Polymer: 29
    Scientific Name: Trypanosoma brucei brucei   Taxonomy    
    Polymer: 30
    Scientific Name: Trypanosoma brucei brucei   Taxonomy    
    Polymer: 31
    Scientific Name: Trypanosoma brucei brucei   Taxonomy    
    Polymer: 32
    Scientific Name: Trypanosoma brucei brucei   Taxonomy    
    Polymer: 33
    Scientific Name: Trypanosoma brucei brucei   Taxonomy    
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Composite of PDB entries (3ZEY, 3ZEX, 3ZF7, 3ZEQ)